Factsheet for Bra000793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90863	Canola	nucleus	96.72	99.01
CDY21301	Canola	nucleus	95.95	98.22
Bra029491.1-P	Field mustard	nucleus	78.81	83.13
AT4G04450.1	Thale cress	nucleus	80.92	79.55
Bra013584.1-P	Field mustard	nucleus	70.91	68.4
VIT_10s0116g01200.t01	Wine grape	nucleus	52.99	51.4
GSMUA_Achr5P16750_001	Banana	nucleus	47.4	50.62
Solyc02g032950.2.1	Tomato	nucleus	48.36	50.4
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	33.91	50.29
PGSC0003DMT400056725	Potato	nucleus	47.98	50.2
KRH02033	Soybean	nucleus	46.63	49.49
KRH36485	Soybean	nucleus	51.45	49.35
GSMUA_Achr3P03090_001	Banana	nucleus	36.22	49.21
Solyc02g080890.2.1	Tomato	nucleus	51.64	48.73
PGSC0003DMT400042400	Potato	nucleus	51.64	48.46
KRH11472	Soybean	nucleus	51.45	47.94
Bra027057.1-P	Field mustard	nucleus	50.1	47.1
GSMUA_Achr10P...	Banana	nucleus	44.7	46.77
KRH51128	Soybean	nucleus, plastid	46.44	46.62
GSMUA_Achr6P13630_001	Banana	nucleus	45.66	45.23
GSMUA_Achr2P15200_001	Banana	nucleus	46.05	44.92
GSMUA_Achr6P05880_001	Banana	nucleus	40.85	44.54
GSMUA_Achr10P...	Banana	nucleus	43.74	44.51
Bra034482.1-P	Field mustard	nucleus	42.97	43.98
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	36.22	38.52
TraesCS3B01G199000.2	Wheat	nucleus	38.34	34.31
Bra036315.1-P	Field mustard	nucleus	32.37	34.29
TraesCS3A01G167200.1	Wheat	nucleus	37.96	34.26
Zm00001d039245_P001	Maize	nucleus	35.07	33.64
EES02155	Sorghum	nucleus	36.03	32.81
Bra019123.1-P	Field mustard	nucleus	12.14	32.47
Bra008435.1-P	Field mustard	nucleus	17.73	31.72
HORVU3Hr1G033740.2	Barley	nucleus, plastid	37.96	31.32
TraesCS3D01G173300.2	Wheat	plastid	38.15	31.13
Bra035148.1-P	Field mustard	nucleus	17.73	30.67
Bra025693.1-P	Field mustard	nucleus	16.96	30.66
Bra031053.1-P	Field mustard	nucleus	27.75	30.64
Bra016535.1-P	Field mustard	nucleus	27.55	30.17
Bra003588.1-P	Field mustard	nucleus	16.96	29.63
Bra007884.1-P	Field mustard	nucleus	21.77	29.5
Bra004285.1-P	Field mustard	nucleus	18.3	28.96
Bra010220.1-P	Field mustard	nucleus	16.18	27.27
Bra011299.1-P	Field mustard	nucleus	15.99	26.18
Bra006283.1-P	Field mustard	nucleus	25.24	24.86
Bra023505.1-P	Field mustard	nucleus	24.66	24.81
Bra008719.1-P	Field mustard	nucleus	25.24	23.77
Bra023983.1-P	Field mustard	nucleus	15.8	23.77
Bra040505.1-P	Field mustard	nucleus	23.7	22.99
Os01t0246700-01	Rice	nucleus	15.22	19.13
Bra025692.1-P	Field mustard	nucleus	8.29	17.84
Bra016263.1-P	Field mustard	nucleus	21.19	14.71

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra000793	EnsemblPlants:Bra000793.1	EnsemblPlants:Bra000793.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4C9B4	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00025404A6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

AT4G04450 (E=1e-185) WRKY42, AtWRKY42 | WRKY42; transcription factor

Coordinates

chrA03:+:13151295..13153762

Molecular Weight (calculated)

57157.8 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.756

Length

519 amino acids

Sequence
(BLAST)

001: MFRFPVSLGG PHDNPKQPQS SDEQPHRAMI DEVDFFRSEK RDDQNIITDE TNRVHVKREN SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME
101: EKRSKIENVQ LREELKKAAE EIQRLKEMLS QTTNNFNSLQ MQLVAVMRQQ EDNHHLAMTG SKDMTNKRHE GSEMVPRQFM ELGLPTAEVS SEERTTVRSR
201: SPPSLLENSS SRQRGKRLLE REESPETQSN GWGNPNKVSK HNASSSNDNV SAIDQSTAEA TMRKARVSVR ARSEAPTLSD GCHWRKYGQK MAKGNPCPRA
301: YFRCTMAVGC PVRKQVQRCA EERSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS TMSSQDGLMN PTNLFARTML PCSSSMATIS ASAPFPTITL
401: DLTESASNVN NQTNNNPLMQ FPQRSGFTEL NQSGLPQMMG QALYYNQQQS KFSGLQIPTQ SLNAGENVSA ATAAIAANPN FAAALAAALT SIINGPNNHK
501: NGDSNTGNNN VRTSSVERQ

Best Arabidopsis Sequence Match ( AT4G04450.1 )
(BLAST)

001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.