Factsheet for TraesCS3A01G167200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G199000.2	Wheat	nucleus	98.96	98.1
TraesCS3D01G173300.2	Wheat	plastid	98.78	89.31
HORVU3Hr1G033740.2	Barley	nucleus, plastid	95.65	87.44
Os01t0246700-01	Rice	nucleus	55.65	77.48
Zm00001d039245_P001	Maize	nucleus	60.17	63.96
EES02155	Sorghum	nucleus	61.74	62.28
CDX97845	Canola	nucleus	21.04	50.21
GSMUA_Achr3P03090_001	Banana	nucleus	33.22	50.0
GSMUA_Achr5P16750_001	Banana	nucleus	39.3	46.5
Solyc02g032950.2.1	Tomato	nucleus	39.65	45.78
PGSC0003DMT400056725	Potato	nucleus	38.78	44.96
VIT_10s0116g01200.t01	Wine grape	nucleus	40.52	43.55
GSMUA_Achr10P...	Banana	nucleus	37.39	43.35
GSMUA_Achr2P15200_001	Banana	nucleus	40.0	43.23
PGSC0003DMT400042400	Potato	nucleus	41.39	43.04
GSMUA_Achr6P13630_001	Banana	nucleus	38.96	42.75
Solyc02g080890.2.1	Tomato	nucleus	40.87	42.73
GSMUA_Achr6P05880_001	Banana	nucleus	35.3	42.65
GSMUA_Achr10P...	Banana	nucleus	36.52	41.18
KRH02033	Soybean	nucleus	34.61	40.7
KRH36485	Soybean	nucleus	37.91	40.3
KRH11472	Soybean	nucleus	38.43	39.68
KRH51128	Soybean	nucleus, plastid	35.65	39.65
VIT_12s0059g00880.t01	Wine grape	nucleus	40.87	39.63
CDX82900	Canola	nucleus	35.83	39.54
PGSC0003DMT400038852	Potato	nucleus	38.26	39.5
AT1G62300.1	Thale cress	nucleus	37.91	39.42
AT4G04450.1	Thale cress	nucleus	35.83	39.02
CDY19535	Canola	nucleus	37.22	38.77
CDY12937	Canola	nucleus	37.22	38.77
AT4G22070.1	Thale cress	nucleus	36.17	38.66
Bra027057.1-P	Field mustard	nucleus	37.04	38.59
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	32.7	38.52
CDY21301	Canola	nucleus	33.91	38.46
Bra013584.1-P	Field mustard	nucleus	35.83	38.29
Bra034482.1-P	Field mustard	nucleus	33.74	38.26
CDX90863	Canola	nucleus	33.74	38.26
Bra000793.1-P	Field mustard	nucleus	34.26	37.96
CDY24892	Canola	nucleus	34.43	37.79
CDY08634	Canola	nucleus	32.7	37.38
CDX94553	Canola	nucleus	31.83	37.27
KRH22585	Soybean	nucleus	39.3	36.81
CDY16669	Canola	nucleus	31.3	36.59
Solyc07g051840.2.1	Tomato	nucleus	39.48	35.97
Bra029491.1-P	Field mustard	nucleus	30.61	35.77
KRH25355	Soybean	nucleus	36.7	34.36
KRH56160	Soybean	nucleus	37.04	33.92
TraesCS4A01G396400.2	Wheat	nucleus	29.74	28.45
TraesCS4A01G396300.1	Wheat	nucleus	28.35	27.86
TraesCS7A01G096500.1	Wheat	nucleus	29.39	27.66
TraesCS7A01G096300.1	Wheat	nucleus	28.7	27.32
TraesCS5A01G225600.1	Wheat	nucleus	14.78	25.68
TraesCS5A01G225500.1	Wheat	nucleus	12.0	25.46
TraesCS6A01G146900.1	Wheat	nucleus	15.48	25.43
TraesCS7A01G508800.1	Wheat	nucleus	14.26	25.08
TraesCS7A01G508700.1	Wheat	nucleus	13.74	24.38
TraesCS6A01G326500.2	Wheat	nucleus	23.13	24.05
TraesCS4A01G396200.1	Wheat	nucleus	23.48	22.31
TraesCS7A01G509000.1	Wheat	nucleus	13.22	21.84
TraesCS7A01G096200.1	Wheat	nucleus	6.09	14.46

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS3A01G167200
EnsemblPlants:TraesCS3A01G167200.1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:172963538..172966149

Molecular Weight (calculated)

60169.3 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.582

Length

575 amino acids

Sequence
(BLAST)

001: MDKGHLGGGG GGGGLLALDA SPRQLGFLNL LSPAPFHRSM EADDGGGGGG GRGRRSIEVD FFSDEKKNMK KSRASAGADA EDHKDQASAA GLAIKKEDLT
101: INLLTGNNTR SDRSMVVDDD GASRADEDRN GRNTGELAAM QAELSRMNEE NQRLRGMLTQ VNSSYHALQM HLVALMQQRT QMPPVQPQQP PTHEDGKNES
201: AIVPRQFLGL GPSGASADVA EEPSNSSTEV GSPRRSSSNG NEDPERGDNP DGPSTAGWLP GRGMSQQQQQ QLGAAAKGHD QQAQEATMRK ARVSVRARSE
301: APIIADGCQW RKYGQKMAKG NPCPRAYYRC TMATGCPVRK QVQRCAEDRT ILITTYEGTH NHPLPPAAMA MASTTSAAAS MLLSGSMPSA DGAGLMSSNF
401: LARTVLPCSS SMATISASAP FPTVTLDLTH APPGAPNAMP LNVARPHAPG QFHVPMPGGG MAPAFAMPPH MLYNQSKFSG LQMSSDSVDA GQFAQPRPPM
501: GLPGQLSDTV SAAAAAITAD PNFTVALAAA ISSIMAGQHA AGNSNANNSN NNTSNNNVTT TSNNTTSNNT NSETQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.