Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19535 | Canola | nucleus | 86.44 | 86.59 |
| CDY12937 | Canola | nucleus | 86.26 | 86.41 |
| Bra027057.1-P | Field mustard | nucleus | 85.9 | 86.05 |
| Bra034482.1-P | Field mustard | nucleus | 75.05 | 81.85 |
| CDY08634 | Canola | nucleus | 72.51 | 79.72 |
| CDY24892 | Canola | nucleus | 72.15 | 76.14 |
| PGSC0003DMT400056725 | Potato | nucleus | 49.37 | 55.04 |
| Solyc02g032950.2.1 | Tomato | nucleus | 49.55 | 55.02 |
| GSMUA_Achr3P03090_001 | Banana | nucleus | 37.61 | 54.45 |
| VIT_10s0116g01200.t01 | Wine grape | nucleus | 52.08 | 53.83 |
| AT4G22070.1 | Thale cress | nucleus | 52.08 | 53.53 |
| GSMUA_Achr3P31130_001 | Banana | mitochondrion, nucleus | 33.63 | 53.14 |
| KRH36485 | Soybean | nucleus | 50.99 | 52.13 |
| PGSC0003DMT400042400 | Potato | nucleus | 52.08 | 52.08 |
| KRH02033 | Soybean | nucleus | 45.93 | 51.94 |
| AT4G04450.1 | Thale cress | nucleus | 49.55 | 51.89 |
| KRH11472 | Soybean | nucleus | 52.26 | 51.89 |
| Solyc02g080890.2.1 | Tomato | nucleus | 51.54 | 51.82 |
| GSMUA_Achr5P16750_001 | Banana | nucleus | 45.21 | 51.44 |
| KRH51128 | Soybean | nucleus, plastid | 47.74 | 51.06 |
| GSMUA_Achr10P... | Banana | nucleus | 43.76 | 48.79 |
| GSMUA_Achr2P15200_001 | Banana | nucleus | 46.11 | 47.93 |
| GSMUA_Achr10P... | Banana | nucleus | 43.76 | 47.45 |
| GSMUA_Achr6P05880_001 | Banana | nucleus | 40.14 | 46.64 |
| GSMUA_Achr6P13630_001 | Banana | nucleus | 43.76 | 46.18 |
| GSMUA_Achr6P07620_001 | Banana | nucleus, plastid | 37.43 | 42.42 |
| Zm00001d039245_P001 | Maize | nucleus | 37.25 | 38.08 |
| TraesCS3A01G167200.1 | Wheat | nucleus | 39.42 | 37.91 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 39.6 | 37.76 |
| EES02155 | Sorghum | nucleus | 37.61 | 36.49 |
| HORVU3Hr1G033740.2 | Barley | nucleus, plastid | 39.42 | 34.66 |
| TraesCS3D01G173300.2 | Wheat | plastid | 39.42 | 34.28 |
| AT4G01720.1 | Thale cress | nucleus | 29.66 | 33.54 |
| AT1G69810.1 | Thale cress | nucleus | 21.7 | 31.01 |
| AT4G31800.1 | Thale cress | nucleus | 17.36 | 30.97 |
| AT2G25000.1 | Thale cress | nucleus | 14.83 | 30.26 |
| AT1G80840.1 | Thale cress | nucleus | 16.27 | 29.8 |
| AT1G68150.1 | Thale cress | nucleus | 18.63 | 27.54 |
| AT1G18860.1 | Thale cress | nucleus | 25.86 | 27.08 |
| AT5G15130.1 | Thale cress | nucleus | 23.33 | 23.54 |
| Os01t0246700-01 | Rice | nucleus | 16.64 | 22.28 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:842527 | ProteinID:AAB60774.1 | ProteinID:AAK01128.1 | EMBL:AB493514 |
| ProteinID:AEE33948.1 | EMBL:AF224702 | EMBL:AF331712 | ArrayExpress:AT1G62300 | EnsemblPlantsGene:AT1G62300 | RefSeq:AT1G62300 |
| TAIR:AT1G62300 | RefSeq:AT1G62300-TAIR-G | EnsemblPlants:AT1G62300.1 | TAIR:AT1G62300.1 | UniProt:C0SV11 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0010200 | GO:GO:0016036 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045892 | GO:GO:0080169 |
| InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_564792.1 | PFAM:PF03106 | PO:PO:0000025 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000256 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF31 |
| UniProt:Q9C519 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0000138F95 | Symbol:WRKY6 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | SEG:seg | : | : | : | : |
Description
WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
Coordinates
chr1:-:23016569..23019494
Molecular Weight (calculated)
60596.4 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.807
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.