Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86714 | Canola | nucleus | 26.14 | 74.12 |
| CDX82900 | Canola | nucleus | 94.61 | 43.76 |
| Bra013584.1-P | Field mustard | nucleus | 95.44 | 42.75 |
| AT4G22070.1 | Thale cress | nucleus | 84.23 | 37.73 |
| CDY16669 | Canola | nucleus | 69.29 | 33.94 |
| CDY21301 | Canola | nucleus | 71.37 | 33.92 |
| CDX90863 | Canola | nucleus | 71.37 | 33.92 |
| GSMUA_Achr3P31130_001 | Banana | mitochondrion, nucleus | 48.13 | 33.14 |
| CDX94553 | Canola | nucleus | 67.22 | 32.99 |
| GSMUA_Achr3P03090_001 | Banana | nucleus | 50.21 | 31.68 |
| VIT_10s0116g01200.t01 | Wine grape | nucleus | 63.49 | 28.6 |
| Solyc02g032950.2.1 | Tomato | nucleus | 58.51 | 28.31 |
| KRH36485 | Soybean | nucleus | 62.66 | 27.91 |
| CDY24892 | Canola | nucleus | 60.58 | 27.86 |
| PGSC0003DMT400056725 | Potato | nucleus | 56.85 | 27.62 |
| CDY19535 | Canola | nucleus | 62.66 | 27.36 |
| CDY12937 | Canola | nucleus | 62.66 | 27.36 |
| Solyc02g080890.2.1 | Tomato | nucleus | 62.24 | 27.27 |
| PGSC0003DMT400042400 | Potato | nucleus | 62.24 | 27.12 |
| GSMUA_Achr10P... | Banana | nucleus | 55.6 | 27.02 |
| KRH11472 | Soybean | nucleus | 62.24 | 26.93 |
| GSMUA_Achr5P16750_001 | Banana | nucleus | 53.94 | 26.75 |
| KRH02033 | Soybean | nucleus | 53.94 | 26.58 |
| GSMUA_Achr6P05880_001 | Banana | nucleus | 50.62 | 25.63 |
| CDY08634 | Canola | nucleus | 53.11 | 25.45 |
| KRH51128 | Soybean | nucleus, plastid | 53.53 | 24.95 |
| GSMUA_Achr2P15200_001 | Banana | nucleus | 54.77 | 24.81 |
| GSMUA_Achr6P13630_001 | Banana | nucleus | 53.11 | 24.43 |
| GSMUA_Achr10P... | Banana | nucleus | 51.45 | 24.31 |
| CDX81493 | Canola | nucleus | 31.12 | 24.19 |
| CDY01891 | Canola | nucleus | 32.37 | 23.78 |
| CDX96044 | Canola | nucleus | 32.37 | 23.78 |
| GSMUA_Achr6P07620_001 | Banana | nucleus, plastid | 48.13 | 23.77 |
| CDY26717 | Canola | nucleus | 28.22 | 23.69 |
| Zm00001d039245_P001 | Maize | nucleus | 47.72 | 21.26 |
| CDY11652 | Canola | nucleus | 33.61 | 21.15 |
| CDY68857 | Canola | nucleus | 32.37 | 21.08 |
| TraesCS3A01G167200.1 | Wheat | nucleus | 50.21 | 21.04 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 50.62 | 21.03 |
| EES02155 | Sorghum | nucleus | 49.38 | 20.88 |
| CDY56082 | Canola | nucleus | 32.78 | 20.63 |
| CDX69548 | Canola | nucleus | 36.51 | 20.37 |
| CDY22006 | Canola | nucleus | 41.08 | 20.2 |
| CDY07121 | Canola | nucleus | 41.08 | 20.0 |
| HORVU3Hr1G033740.2 | Barley | nucleus, plastid | 50.21 | 19.24 |
| TraesCS3D01G173300.2 | Wheat | plastid | 50.21 | 19.03 |
| CDX72327 | Canola | nucleus | 22.41 | 18.95 |
| CDX75196 | Canola | nucleus | 21.99 | 18.73 |
| CDX85563 | Canola | nucleus | 23.65 | 18.39 |
| CDX87347 | Canola | nucleus | 22.82 | 18.33 |
| CDX88573 | Canola | nucleus | 22.82 | 18.27 |
| CDY39879 | Canola | nucleus | 23.24 | 18.24 |
| CDX96692 | Canola | nucleus | 39.0 | 18.18 |
| CDX83804 | Canola | nucleus | 38.59 | 18.06 |
| CDY22299 | Canola | nucleus | 21.58 | 17.93 |
| CDY67287 | Canola | nucleus | 21.58 | 17.93 |
| CDX79347 | Canola | nucleus | 21.99 | 17.79 |
| CDY63770 | Canola | nucleus | 37.76 | 17.7 |
| CDX81900 | Canola | nucleus | 37.76 | 17.53 |
| CDX67971 | Canola | nucleus | 21.58 | 17.51 |
| CDY21693 | Canola | nucleus | 37.34 | 17.34 |
| CDX70593 | Canola | nucleus | 37.34 | 17.11 |
| CDY28692 | Canola | nucleus | 38.17 | 17.1 |
| CDX78611 | Canola | nucleus | 37.34 | 17.08 |
| CDX68787 | Canola | nucleus | 22.41 | 16.93 |
| CDX85052 | Canola | nucleus | 38.59 | 16.91 |
| CDX69549 | Canola | nucleus | 38.59 | 16.88 |
| CDY70096 | Canola | nucleus | 21.99 | 15.36 |
| CDY72612 | Canola | nucleus | 9.96 | 9.96 |
| CDY19255 | Canola | nucleus | 9.54 | 9.66 |
| Os01t0246700-01 | Rice | nucleus | 9.13 | 5.33 |
| CDX86713 | Canola | nucleus | 0.83 | 1.69 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078E6U9 | EnsemblPlants:CDX97845 | ProteinID:CDX97845 | ProteinID:CDX97845.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00105168001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF31 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EDE5C4 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g40940D
Coordinates
chrLK031901:-:940247..942873
Molecular Weight (calculated)
26231.0 Da
IEP (calculated)
8.723
GRAVY (calculated)
-0.656
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSNLFYATE GNAEGGKRQE VQTMVPRQFM DLGPSSGAAE QDAEVSSEER TMLRSGSPPL LLENSNPRES GKRLLAREES PESESNAWGN PNKVSKHNPP
101: SGGNNNNNGN RNLIDQSAAE ATMRKARVSV RARSEATMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAGG CPVRKQVQRC AEDRSILITT YEGNHNHPLP
201: PAAMAMASTT TAAASMLLSG SVSSQDNLMN PTIILFILYG I
101: SGGNNNNNGN RNLIDQSAAE ATMRKARVSV RARSEATMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAGG CPVRKQVQRC AEDRSILITT YEGNHNHPLP
201: PAAMAMASTT TAAASMLLSG SVSSQDNLMN PTIILFILYG I
001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
Arabidopsis Description
WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.