CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86714	Canola	nucleus	28.92	97.65
CDY19255	Canola	nucleus	28.22	34.03
CDX97845	Canola	nucleus	23.69	28.22
CDX83804	Canola	nucleus	49.13	27.38
CDY21693	Canola	nucleus	49.48	27.36
CDX81900	Canola	nucleus	49.48	27.36
CDX96692	Canola	nucleus	48.78	27.08
AT1G18860.1	Thale cress	nucleus	49.13	26.7
CDX69548	Canola	nucleus	40.07	26.62
Solyc03g113120.2.1	Tomato	nucleus	42.16	23.09
PGSC0003DMT400046570	Potato	nucleus	41.81	22.86
VIT_17s0000g05810.t01	Wine grape	nucleus	47.39	22.48
CDX78611	Canola	nucleus	40.77	22.2
CDY63770	Canola	nucleus	39.72	22.18
CDX70593	Canola	nucleus	40.42	22.05
CDX86713	Canola	nucleus	9.06	22.03
CDX81493	Canola	nucleus	23.34	21.61
TraesCS3B01G130000.1	Wheat	nucleus	36.59	21.43
TraesCS3D01G113300.1	Wheat	nucleus	36.59	21.34
KRH63398	Soybean	nucleus	39.37	21.28
KRH54509	Soybean	nucleus	45.3	21.14
KRH56941	Soybean	nucleus	41.12	21.11
CDX85052	Canola	nucleus	40.42	21.09
CDY68857	Canola	nucleus	27.18	21.08
CDX69549	Canola	nucleus	40.42	21.05
CDY28692	Canola	nucleus	39.37	21.0
CDY56082	Canola	nucleus	27.87	20.89
CDY01891	Canola	nucleus	23.69	20.73
CDX96044	Canola	nucleus	23.34	20.43
CDY11652	Canola	nucleus	27.18	20.37
CDX72327	Canola	nucleus	20.21	20.35
Os01t0185900-01	Rice	nucleus	35.89	20.32
KRH03442	Soybean	nucleus	42.16	20.17
CDX75196	Canola	nucleus	19.86	20.14
TraesCS7D01G092500.2	Wheat	nucleus	41.46	20.14
HORVU3Hr1G020210.2	Barley	nucleus	36.59	19.96
TraesCS7D01G092600.1	Wheat	nucleus	41.46	19.67
HORVU7Hr1G021260.1	Barley	nucleus	41.46	19.54
Solyc06g070990.2.1	Tomato	nucleus	43.55	19.26
CDY39879	Canola	nucleus	20.56	19.22
CDY22006	Canola	nucleus	32.75	19.18
Zm00001d008794_P001	Maize	nucleus	35.89	19.07
CDY07121	Canola	nucleus	32.75	18.99
Os06t0146250-00	Rice	nucleus	39.72	18.87
CDY67287	Canola	nucleus	18.82	18.62
CDY22299	Canola	nucleus	18.82	18.62
CDX68787	Canola	nucleus	20.21	18.18
OQU75809	Sorghum	nucleus	39.37	18.08
EES02331	Sorghum	nucleus	34.49	18.07
CDX88573	Canola	nucleus	18.82	17.94
Zm00001d039532_P001	Maize	nucleus	33.8	17.73
TraesCS7D01G092300.1	Wheat	nucleus	37.28	17.69
CDX87347	Canola	nucleus	18.47	17.67
TraesCS7D01G092400.1	Wheat	nucleus	36.93	17.52
CDX67971	Canola	nucleus	18.12	17.51
CDY21301	Canola	nucleus	30.66	17.36
CDX90863	Canola	nucleus	30.66	17.36
CDX79347	Canola	nucleus	17.77	17.11
CDY16669	Canola	nucleus	29.27	17.07
CDX94553	Canola	nucleus	28.92	16.9
CDX82900	Canola	nucleus	30.66	16.89
CDY70096	Canola	nucleus	20.21	16.81
CDY19535	Canola	nucleus	30.31	15.76
CDY12937	Canola	nucleus	30.31	15.76
CDY24892	Canola	nucleus	27.18	14.89
CDY08634	Canola	nucleus	24.74	14.12
Zm00001d045375_P001	Maize	nucleus	11.5	13.2
CDX85563	Canola	nucleus	13.59	12.58
CDY72612	Canola	nucleus	0.7	0.83

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078GNE7	UniProt:A0A078GNE7	EnsemblPlants:CDY26717	ProteinID:CDY26717
ProteinID:CDY26717.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00035620001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000253F4CB	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA06g13050DBnaA06g13050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNE7]

Coordinates

chrLK032193:-:298945..299914

Molecular Weight (calculated)

30728.8 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.441

Length

287 amino acids

Sequence
(BLAST)

001: MNDGCQWRKY GQKIAKGNPC PRAYYRCTIA PSCPVQRCSE DMSILISTYE GTHNHPLPLS ATAMASATSA AASMLLSGAS SSSSAAAADL HGLNFSLSGN
101: SNIPKPKSPF LQTSSSGHPT VTLDLTTSSS SQQPFLSMLN RFSAPPSNVS RSNSYPSTNL NFSNSTNTLM NWGGVGNRNE QYRAAYGNIS TLQQSPYHHV
201: IQTRIAGSSL DPFGRSSSYS PHPTQTNLDY VGIKSITHQV QYLPAETIKA ITTNSNFQSA LATALSSIMG TDVKMDNVTR NEAEKSP

Best Arabidopsis Sequence Match ( AT1G18860.1 )
(BLAST)

001: MEKDDFLRSG HGREESHDEM RKLDSSHDDS HQEHDHIIRS KLDSTKVEMD EAKEENRRLK SSLSKIKKDF DILQTQYNQL MAKHNEPTKF QSKGHHQDKG
101: EDEDREKVNE REELVSLSLG RRLNSEVPSG SNKEEKNKDV EEAEGDRNYD DNEKSSIQGL SMGIEYKALS NPNEKLEIDH NQETMSLEIS NNNKIRSQNS
201: FGFKNDGDDH EDEDEILPQN LVKKTRVSVR SRCETPTMND GCQWRKYGQK IAKGNPCPRA YYRCTIAASC PVRKQVQRCS EDMSILISTY EGTHNHPLPM
301: SATAMASATS AAASMLLSGA SSSSSAAADL HGLNFSLSGN NITPKPKTHF LQSPSSSGHP TVTLDLTTSS SSQQPFLSML NRFSSPPSNV SRSNSYPSTN
401: LNFSNNTNTL MNWGGGGNPS DQYRAAYGNI NTHQQSPYHK IIQTRTAGSS FDPFGRSSSS HSPQINLDHI GIKNIISHQV PSLPAETIKA ITTDPSFQSA
501: LATALSSIMG GDLKIDHNVT RNEAEKSP

Arabidopsis Description

WRKY61WRKY DNA-binding protein 61 [Source:TAIR;Acc:AT1G18860]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.