Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87347 | Canola | nucleus | 96.68 | 97.0 |
| CDY22299 | Canola | nucleus | 86.38 | 89.66 |
| CDX67971 | Canola | nucleus | 88.37 | 89.56 |
| CDY67287 | Canola | nucleus | 86.05 | 89.31 |
| CDX79347 | Canola | nucleus | 87.71 | 88.59 |
| AT1G80840.1 | Thale cress | nucleus | 86.71 | 86.42 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 36.21 | 56.77 |
| KRH23643 | Soybean | nucleus | 57.48 | 55.99 |
| KRH47344 | Soybean | nucleus | 56.81 | 54.98 |
| KRH44560 | Soybean | nucleus | 56.81 | 54.63 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 55.48 | 53.7 |
| KRH09652 | Soybean | nucleus | 56.48 | 51.52 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 29.9 | 47.37 |
| GSMUA_Achr11P... | Banana | nucleus | 37.87 | 46.53 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 36.21 | 46.38 |
| CDX86714 | Canola | nucleus | 12.96 | 45.88 |
| Solyc03g116890.2.1 | Tomato | nucleus | 52.82 | 45.43 |
| GSMUA_Achr10P... | Banana | nucleus | 34.88 | 45.26 |
| PGSC0003DMT400051047 | Potato | nucleus | 52.49 | 44.51 |
| CDX72327 | Canola | nucleus | 41.86 | 44.21 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 24.92 | 43.1 |
| Solyc06g068460.2.1 | Tomato | nucleus | 50.83 | 42.5 |
| PGSC0003DMT400073396 | Potato | nucleus | 50.5 | 42.22 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 38.54 | 42.18 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 38.54 | 41.43 |
| CDX75196 | Canola | nucleus | 38.87 | 41.34 |
| CDY39879 | Canola | nucleus | 41.86 | 41.04 |
| CDX68787 | Canola | nucleus | 41.86 | 39.5 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 29.24 | 39.46 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 37.87 | 39.45 |
| GSMUA_Achr10P... | Banana | nucleus | 37.21 | 38.89 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 41.86 | 37.61 |
| Zm00001d020492_P001 | Maize | nucleus | 37.54 | 37.42 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 40.2 | 37.0 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 39.2 | 36.65 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 39.53 | 36.5 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 39.87 | 36.47 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 39.2 | 36.42 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 39.2 | 36.2 |
| Os09t0417600-02 | Rice | nucleus | 39.2 | 36.09 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 39.2 | 36.09 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 38.21 | 36.05 |
| CDY70096 | Canola | nucleus | 41.2 | 35.94 |
| Os02t0181300-01 | Rice | nucleus | 41.53 | 35.92 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 38.54 | 35.37 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 38.87 | 35.35 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 33.89 | 35.29 |
| Zm00001d053746_P001 | Maize | nucleus | 37.54 | 35.2 |
| Os06t0649000-01 | Rice | nucleus | 39.2 | 35.01 |
| EER90124 | Sorghum | nucleus | 39.53 | 34.8 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 37.87 | 34.55 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 37.87 | 34.44 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 30.9 | 34.32 |
| EER98905 | Sorghum | nucleus, plastid | 37.21 | 34.25 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 39.53 | 34.2 |
| Zm00001d046805_P001 | Maize | nucleus | 39.87 | 34.19 |
| Zm00001d036726_P001 | Maize | nucleus | 38.87 | 34.01 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 37.21 | 33.84 |
| EER88729 | Sorghum | nucleus | 38.87 | 33.62 |
| Zm00001d015515_P001 | Maize | nucleus | 38.54 | 33.43 |
| EES04642 | Sorghum | nucleus | 40.2 | 33.24 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 38.54 | 33.14 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 38.21 | 33.05 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 29.57 | 32.84 |
| Zm00001d020495_P001 | Maize | nucleus | 28.9 | 32.71 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 37.87 | 32.29 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 37.87 | 32.11 |
| TraesCS7D01G497300.1 | Wheat | plastid | 39.2 | 31.72 |
| KXG35639 | Sorghum | nucleus | 30.56 | 31.19 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 37.54 | 30.46 |
| Zm00001d005749_P001 | Maize | nucleus | 34.88 | 29.91 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 37.87 | 29.16 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 39.2 | 29.06 |
| Os09t0417800-01 | Rice | nucleus | 29.9 | 28.3 |
| CDX97845 | Canola | nucleus | 18.27 | 22.82 |
| CDX94553 | Canola | nucleus | 31.23 | 19.14 |
| CDY16669 | Canola | nucleus | 31.23 | 19.11 |
| CDY26717 | Canola | nucleus | 17.94 | 18.82 |
| CDY56082 | Canola | nucleus | 23.92 | 18.8 |
| CDY68857 | Canola | nucleus | 22.92 | 18.65 |
| CDX90863 | Canola | nucleus | 31.23 | 18.54 |
| CDY21301 | Canola | nucleus | 31.23 | 18.54 |
| CDY11652 | Canola | nucleus | 23.26 | 18.28 |
| CDX82900 | Canola | nucleus | 31.56 | 18.23 |
| CDY01891 | Canola | nucleus | 18.27 | 16.77 |
| CDY12937 | Canola | nucleus | 30.23 | 16.49 |
| CDY19535 | Canola | nucleus | 30.23 | 16.49 |
| CDX81493 | Canola | nucleus | 16.94 | 16.45 |
| CDX85563 | Canola | nucleus | 16.94 | 16.45 |
| CDY22006 | Canola | nucleus | 26.58 | 16.33 |
| CDY07121 | Canola | nucleus | 26.58 | 16.16 |
| CDX96044 | Canola | nucleus | 17.61 | 16.16 |
| CDY24892 | Canola | nucleus | 27.91 | 16.03 |
| CDY63770 | Canola | nucleus | 26.91 | 15.76 |
| CDY21693 | Canola | nucleus | 26.58 | 15.41 |
| CDX69548 | Canola | nucleus | 21.93 | 15.28 |
| CDX81900 | Canola | nucleus | 26.25 | 15.22 |
| CDY08634 | Canola | nucleus | 25.25 | 15.11 |
| CDX96692 | Canola | nucleus | 25.58 | 14.89 |
| CDX70593 | Canola | nucleus | 25.91 | 14.83 |
| CDX83804 | Canola | nucleus | 25.25 | 14.76 |
| CDX78611 | Canola | nucleus | 25.58 | 14.61 |
| CDX69549 | Canola | nucleus | 26.58 | 14.52 |
| CDX85052 | Canola | nucleus | 26.25 | 14.36 |
| CDY28692 | Canola | nucleus | 25.25 | 14.13 |
| CDY19255 | Canola | nucleus | 10.63 | 13.45 |
| CDX86713 | Canola | nucleus | 3.65 | 9.32 |
| CDY72612 | Canola | nucleus | 6.31 | 7.88 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:C4N0X1 | UniProt:C4N0X1 | EnsemblPlants:CDX88573 | ProteinID:CDX88573 |
| ProteinID:CDX88573.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00148137001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0001A647A8 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g40170DWRKY40-1 transcription factor [Source:UniProtKB/TrEMBL;Acc:C4N0X1]
Coordinates
chrLK031855:-:1675378..1677230
Molecular Weight (calculated)
33472.4 Da
IEP (calculated)
8.324
GRAVY (calculated)
-0.730
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQYSSSLVD TSLDLTIGIT RMRVEEDSTT SALVDELKRV NAENKKLSEM LTLMCDNYNV LRKQLMEYVN KNNNTAERDD QTSPPKKRKS PARDEAISSA
101: VIGGVSESSS TDQDDQYLCK KQREETVVKE KVSRVYYKTE ASDTTLVVKD GYQWRKYGQK VTRDNPSPRA YFKCACAPSC SVKKKVQRSV EDQSVLVATY
201: EGEHNHPMPS QMDSNNGLNR YVSLGGPVAP AAAANGSCSL AKPVDLTESK KVRSPSRIEF PEVQKLLVEQ MASSLTKDPN FTAALAAAVT GRLYQQNQTE
301: K
101: VIGGVSESSS TDQDDQYLCK KQREETVVKE KVSRVYYKTE ASDTTLVVKD GYQWRKYGQK VTRDNPSPRA YFKCACAPSC SVKKKVQRSV EDQSVLVATY
201: EGEHNHPMPS QMDSNNGLNR YVSLGGPVAP AAAANGSCSL AKPVDLTESK KVRSPSRIEF PEVQKLLVEQ MASSLTKDPN FTAALAAAVT GRLYQQNQTE
301: K
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.