Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G232700.1 | Wheat | nucleus | 93.1 | 59.78 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 90.23 | 57.93 |
| Bra019123.1-P | Field mustard | nucleus | 40.8 | 36.6 |
| Zm00001d020495_P001 | Maize | nucleus | 54.6 | 35.71 |
| Os09t0417800-01 | Rice | nucleus | 61.49 | 33.65 |
| KXG35639 | Sorghum | nucleus | 56.32 | 33.22 |
| Solyc12g042590.1.1 | Tomato | nucleus | 38.51 | 31.02 |
| PGSC0003DMT400073710 | Potato | nucleus | 37.36 | 29.95 |
| Solyc08g067340.2.1 | Tomato | nucleus | 39.66 | 27.27 |
| PGSC0003DMT400019061 | Potato | nucleus | 38.51 | 26.48 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 42.53 | 26.43 |
| Solyc08g067360.2.1 | Tomato | nucleus | 39.08 | 26.36 |
| PGSC0003DMT400019058 | Potato | nucleus | 39.08 | 26.05 |
| AT2G25000.1 | Thale cress | nucleus | 40.23 | 25.83 |
| CDX75196 | Canola | nucleus | 41.95 | 25.8 |
| CDX79347 | Canola | nucleus | 43.68 | 25.5 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 45.4 | 25.4 |
| Bra003588.1-P | Field mustard | nucleus | 43.1 | 25.25 |
| CDX67971 | Canola | nucleus | 43.1 | 25.25 |
| KRH23643 | Soybean | nucleus | 44.83 | 25.24 |
| CDY22299 | Canola | nucleus | 41.95 | 25.17 |
| CDY67287 | Canola | nucleus | 41.95 | 25.17 |
| Bra008435.1-P | Field mustard | nucleus | 41.95 | 25.17 |
| KRH47344 | Soybean | nucleus | 44.83 | 25.08 |
| CDX87347 | Canola | nucleus | 43.1 | 25.0 |
| Bra035148.1-P | Field mustard | nucleus | 43.1 | 25.0 |
| KRH44560 | Soybean | nucleus | 44.83 | 24.92 |
| CDX88573 | Canola | nucleus | 43.1 | 24.92 |
| CDX72327 | Canola | nucleus | 40.8 | 24.91 |
| KRH15674 | Soybean | nucleus | 40.23 | 24.82 |
| AT1G80840.1 | Thale cress | nucleus | 41.95 | 24.17 |
| CDY39879 | Canola | nucleus | 42.53 | 24.1 |
| Bra010220.1-P | Field mustard | nucleus | 42.53 | 24.03 |
| KRH09652 | Soybean | nucleus | 44.25 | 23.33 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 52.3 | 23.27 |
| AT4G31800.1 | Thale cress | nucleus | 41.38 | 23.23 |
| KRH61669 | Soybean | nucleus | 29.31 | 23.18 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 41.95 | 23.03 |
| Bra011299.1-P | Field mustard | nucleus | 41.38 | 22.71 |
| CDX68787 | Canola | nucleus | 40.8 | 22.26 |
| Solyc06g068460.2.1 | Tomato | nucleus | 45.98 | 22.22 |
| PGSC0003DMT400073396 | Potato | nucleus | 45.98 | 22.22 |
| KRH05350 | Soybean | nucleus | 39.66 | 22.12 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 39.66 | 21.63 |
| Solyc03g116890.2.1 | Tomato | nucleus | 41.95 | 20.86 |
| PGSC0003DMT400051047 | Potato | nucleus | 41.95 | 20.56 |
| Bra023983.1-P | Field mustard | nucleus | 40.23 | 20.29 |
| CDY70096 | Canola | nucleus | 40.23 | 20.29 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 40.8 | 20.11 |
| KRH52329 | Soybean | nucleus | 35.06 | 19.74 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 41.38 | 17.73 |
| HORVU7Hr1G021260.1 | Barley | nucleus | 32.76 | 9.36 |
| HORVU3Hr1G020210.2 | Barley | nucleus | 28.16 | 9.32 |
| HORVU3Hr1G033740.2 | Barley | nucleus, plastid | 32.18 | 8.9 |
| HORVU6Hr1G079710.2 | Barley | nucleus | 29.31 | 8.23 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:A0A287RK14 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 | GO:GO:0009620 | GO:GO:0009719 |
| GO:GO:0009751 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | GO:GO:1900425 | EnsemblPlantsGene:HORVU5Hr1G065380 |
| EnsemblPlants:HORVU5Hr1G065380.2 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000B48859C | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
Description
No Description!
Coordinates
chrchr5H:-:500496285..500497192
Molecular Weight (calculated)
19651.2 Da
IEP (calculated)
8.226
GRAVY (calculated)
-0.638
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: TVCARAEPAD TDANLSVKDG YQWRKYGQKV TRDNPHPRSY FRCAFAPSCP VRKKVQRDAE DTSKLVATYE GEHNHARSPE REFVCNESIA IGHRPCSVSI
101: NPSGRTIRLE DMTNHGSGSR LDLETIRREV VTPEFQKLLV EKMVNSLKND ADFMHALTNA VAERILEIIP ARLS
101: NPSGRTIRLE DMTNHGSGSR LDLETIRREV VTPEFQKLLV EKMVNSLKND ADFMHALTNA VAERILEIIP ARLS
001: MLARVCESYN ELHNHLEKLQ SRQSPEIEQT DIPIKKRKQD PDEFLGFPIG LSSGKTENSS SNEDHHHHHQ QHEQKNQLLS CKRPVTDSFN KAKVSTVYVP
101: TETSDTSLTV KDGFQWRKYG QKVTRDNPSP RAYFRCSFAP SCPVKKKVQR SAEDPSLLVA TYEGTHNHLG PNASEGDATS QGGSSTVTLD LVNGCHRLAL
201: EKNERDNTMQ EVLIQQMASS LTKDSKFTAA LAAAISGRLM EQSRT
101: TETSDTSLTV KDGFQWRKYG QKVTRDNPSP RAYFRCSFAP SCPVKKKVQR SAEDPSLLVA TYEGTHNHLG PNASEGDATS QGGSSTVTLD LVNGCHRLAL
201: EKNERDNTMQ EVLIQQMASS LTKDSKFTAA LAAAISGRLM EQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.