Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- peroxisome 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P22990_001 | Banana | cytosol | 38.75 | 23.48 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 70.0 | 21.37 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 70.0 | 20.0 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 71.25 | 19.19 |
| KXG33957 | Sorghum | nucleus | 45.0 | 13.24 |
| AT3G27420.1 | Thale cress | nucleus | 33.75 | 11.07 |
| CDY03968 | Canola | nucleus | 30.0 | 10.17 |
| CDY42568 | Canola | plastid | 32.5 | 9.74 |
| KRH07095 | Soybean | nucleus | 36.25 | 9.09 |
| CDY36364 | Canola | mitochondrion | 31.25 | 9.06 |
| KRG94362 | Soybean | extracellular | 36.25 | 9.03 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 37.5 | 8.17 |
| Solyc02g067900.2.1 | Tomato | cytosol | 31.25 | 7.62 |
| PGSC0003DMT400017933 | Potato | cytosol | 31.25 | 7.51 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 25.0 | 6.15 |
| Bra033010.1-P | Field mustard | cytosol | 33.75 | 5.49 |
| CDY34147 | Canola | cytosol | 33.75 | 5.07 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G092230.1 | EnsemblPlantsGene:HORVU3Hr1G092230 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PFAM:PF17035 | UniParc:UPI000294F6AB | UniProt:M0X438 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:+:637548547..637548866
Molecular Weight (calculated)
9132.4 Da
IEP (calculated)
10.347
GRAVY (calculated)
-0.055
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MVQGVYGLLD TVASKCRSMT TAEKLELSKR IHKLPQEALD HMVEVVKMRR PEISGSKKVS FNLGRLVYST YLLLLNFSFK
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.