Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27420.1 | Thale cress | nucleus | 57.2 | 55.33 |
| CDY42568 | Canola | plastid | 49.15 | 43.45 |
| CDY36364 | Canola | mitochondrion | 47.88 | 40.94 |
| CDY34147 | Canola | cytosol | 88.98 | 39.4 |
| HORVU3Hr1G092230.1 | Barley | cytosol | 10.17 | 30.0 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 16.53 | 29.55 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 39.41 | 25.34 |
| KRG94362 | Soybean | extracellular | 34.32 | 25.23 |
| KRH07095 | Soybean | nucleus | 33.05 | 24.45 |
| Solyc02g067900.2.1 | Tomato | cytosol | 33.05 | 23.78 |
| PGSC0003DMT400017933 | Potato | cytosol | 31.36 | 22.22 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 23.73 | 20.0 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 21.61 | 19.47 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 23.31 | 18.52 |
| KXG33957 | Sorghum | nucleus | 18.64 | 16.18 |
Protein Annotations
| EnsemblPlants:CDY03968 | EnsemblPlantsGene:GSBRNA2T00117489001 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | ncoils:Coil | PFAM:PF17035 | PFscan:PS51525 | ProteinID:CDY03968 | ProteinID:CDY03968.1 |
| UniParc:UPI0004EF1209 | MapMan:35.2 | : | : | : | : |
Description
BnaC02g36830D
Coordinates
chrLK031948:+:17928..19813
Molecular Weight (calculated)
26503.5 Da
IEP (calculated)
5.672
GRAVY (calculated)
-0.606
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKRAAEAPP SSETQRVKPA DSFGDYRSQV SRLLSQQEKI SLRDQEATMS HSNTAIGAGM SHLKREDLNV LLRQCVRDLT PEVNEMHMRV CSMKLFSDKA
101: TKCSVPADSE EGTEDDVKNL LSNPDIVKKL TSQYSNVLLH ELDDMQQQLE NILDDVVATC RPMSRGEKLD LRKAIMELPG GNRDRIAGIV QEHCKTSGKD
201: FSDEVIANLD QSEDNIMLWR LHYYIGAVKN AQKLAS
101: TKCSVPADSE EGTEDDVKNL LSNPDIVKKL TSQYSNVLLH ELDDMQQQLE NILDDVVATC RPMSRGEKLD LRKAIMELPG GNRDRIAGIV QEHCKTSGKD
201: FSDEVIANLD QSEDNIMLWR LHYYIGAVKN AQKLAS
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.