Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81487 | Canola | cytosol | 39.35 | 27.35 |
| CDX75227 | Canola | plastid | 75.48 | 15.54 |
| CDX68825 | Canola | plastid | 74.84 | 15.4 |
| AT4G32190.1 | Thale cress | plastid | 63.23 | 12.52 |
| VIT_04s0008g05610.t01 | Wine grape | plastid | 48.39 | 9.69 |
| KRH05183 | Soybean | plastid | 42.58 | 8.64 |
| KRH15859 | Soybean | endoplasmic reticulum, vacuole | 38.06 | 8.22 |
| PGSC0003DMT400010993 | Potato | plastid | 38.71 | 7.79 |
| Solyc08g022030.2.1 | Tomato | nucleus | 38.06 | 7.66 |
| Os02t0186400-01 | Rice | plastid | 34.84 | 7.08 |
| Zm00001d053726_P001 | Maize | plastid | 32.26 | 6.49 |
| TraesCS6A01G180500.1 | Wheat | plastid | 30.97 | 6.21 |
| HORVU6Hr1G036020.1 | Barley | plastid | 30.97 | 6.2 |
| EES06399 | Sorghum | plastid | 30.97 | 6.2 |
| TraesCS6D01G164600.1 | Wheat | plastid | 29.68 | 5.95 |
| CDX81488 | Canola | cytosol, nucleus, plastid | 1.94 | 1.96 |
| CDY61790 | Canola | endoplasmic reticulum, extracellular | 3.23 | 1.32 |
| CDX81489 | Canola | nucleus | 1.29 | 1.27 |
| CDY35289 | Canola | nucleus | 1.94 | 0.8 |
| CDY02356 | Canola | cytosol | 0.65 | 0.61 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 0.65 | 0.44 |
| CDX95298 | Canola | nucleus | 0.65 | 0.1 |
Protein Annotations
| EnsemblPlants:CDY61791 | EnsemblPlantsGene:GSBRNA2T00034364001 | ncoils:Coil | PANTHER:PTHR23160 | PANTHER:PTHR23160:SF11 | ProteinID:CDY61791 |
| ProteinID:CDY61791.1 | SEG:seg | UniParc:UPI0004EECCCE | UniProt:A0A078JC42 | MapMan:35.2 | : |
Description
BnaC02g46090DBnaC02g46090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC42]
Coordinates
chrLK034039:+:12073..13569
Molecular Weight (calculated)
18028.7 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.847
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSKTSLT RKQTSFKSHR LNFRRKSQVV EAKLEIQHLK SEHASLELLL QEKDEELTEA RNQLEEVNRE VKELKMLMAS REDELGSSKL QASEAEMGVE
101: RIAELTSRLV QDQMQQQPLE KQPYGDYGME KKRLVMELNF TIENPRLKEM EVLAA
101: RIAELTSRLV QDQMQQQPLE KQPYGDYGME KKRLVMELNF TIENPRLKEM EVLAA
001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
Arabidopsis Description
Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.