Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016661.1-P | Field mustard | cytosol | 93.33 | 95.89 |
| CDX81710 | Canola | plastid | 90.67 | 89.47 |
| CDY55983 | Canola | plastid | 90.67 | 89.47 |
| CDY39640 | Canola | cytosol | 89.33 | 89.33 |
| CDY36554 | Canola | cytosol | 84.0 | 85.14 |
| AT1G15385.1 | Thale cress | cytosol | 74.67 | 76.71 |
Protein Annotations
| EnsemblPlants:CDX96843 | EnsemblPlantsGene:GSBRNA2T00103081001 | InterPro:DUF761_pln | PANTHER:PTHR33098 | PANTHER:PTHR33098:SF6 | PFAM:PF05553 |
| ProteinID:CDX96843 | ProteinID:CDX96843.1 | SEG:seg | UniParc:UPI0004EEAA9C | MapMan:35.2 | : |
Description
BnaA08g23860D
Coordinates
chrLK031895:+:1172044..1172271
Molecular Weight (calculated)
8576.3 Da
IEP (calculated)
10.488
GRAVY (calculated)
-0.769
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKNNNNRNI MKMSSAQESG NGTTNIVITE TRNKKVERNA SMDVDQCAEA FITNFRKQLL LQRLESIENM LSRGL
1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP
Arabidopsis Description
Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.