Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37020 | Canola | nucleus | 95.42 | 94.98 |
| AT2G44950.1 | Thale cress | nucleus | 86.48 | 85.99 |
| CDX74700 | Canola | nucleus | 86.25 | 85.47 |
| CDY18962 | Canola | nucleus | 85.34 | 85.34 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 53.61 | 53.3 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 21.65 | 49.48 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.0 | 49.47 |
| KRH30315 | Soybean | nucleus | 49.14 | 48.81 |
| KRH75261 | Soybean | nucleus | 49.03 | 48.64 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 43.18 | 42.79 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 40.66 | 40.8 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 40.66 | 40.8 |
| Os04t0550400-01 | Rice | nucleus | 41.24 | 40.72 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 40.66 | 40.66 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 40.32 | 40.46 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 40.21 | 40.07 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 39.86 | 39.73 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 39.75 | 39.61 |
| EER88892 | Sorghum | cytosol | 38.26 | 39.25 |
| Zm00001d014640_P035 | Maize | cytosol | 38.26 | 38.84 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 22.11 | 38.14 |
| Zm00001d036507_P003 | Maize | cytosol | 35.85 | 35.94 |
| CDY02453 | Canola | nucleus | 28.18 | 27.89 |
| CDY10575 | Canola | nucleus | 28.06 | 27.71 |
| CDY65754 | Canola | cytosol | 4.01 | 20.23 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | GO:A0A078GLC6 | UniProt:A0A078GLC6 | EnsemblPlants:CDY27400 | ProteinID:CDY27400 |
| ProteinID:CDY27400.1 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00037350001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE81E5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
BnaC04g50050DBnaC04g50050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLC6]
Coordinates
chrLK032203:+:506473..511391
Molecular Weight (calculated)
99171.8 Da
IEP (calculated)
7.040
GRAVY (calculated)
-0.625
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEADRK KRHFSSISTT EAVKKQPFFW PSSEDKLDTA VLQFQNLKLS QKLEAQQVEC SILEDRLSQI KDKQLPSSSC LKTVHKSWEK LTADVESCSI
101: RVIDSSIGAH RSVNKEDGSS PSVKDDFINR LLETGATESS SSNTCSNQKE ENRENTSSQL KQTLCNLVAA TNDLRCLKDE LYPTALRTGL DKDLSGQLAL
201: NELESEMKSF RVVLDDVLVK FKSLSRELQS HRDTDAKVRA DLKRIRGELE NEVVELQQCN GELSALRAER DATSGAFFAV LSPGNKLATR DKARDKQRDL
301: QNMESILKDL TVLASSRLQE LKDLHEERTK ILEKMSVLQS KSVTAISSSQ ACLSLKDQLR KSKEAVFKYM ALLEKLQVEK DSIFWREREM SIKSELVDVA
401: RRSSSVADSR IASLDVEIQK QLDDKSRIKT RLENISKERG RKEIFADMKA LVASFPGEMS SMRSQLENYK ETAGGIHSLR ADVQSLSVVL CRKTKECEAL
501: HLRSADYASQ LHDLNATVCD LKNSHEELKL FLDMYKREST DPRDIAEAKE QEYRAWAHVE SLKSSLDEQN LELRVKAANE AEAVSQQMLA AAEAEIADLR
601: QKIDDCKRDV VKHSDILKSK HEEHGTYLSE MQAIGSAYED IVPQNQQLLL QVTERDDYNI KLFLEGITSR QMQDALLIDK YIMDKDIQQA SASASFLSKK
701: SLRIEDQMRF CTEQYQRLAE DKYQKSVTHE ILQKKRADAV NGLEQARSKL GESHSKAEQS RVDYGALELE LEIERFNRRR IEEEVETVKT KVSRLRSLVE
801: GSSAIQKLRQ ELNEFKEILK CKACNDRSKE VVITKCFHLF CNPCVLKITG TRQRKCPTCS ASFGPNDIKP IYI
101: RVIDSSIGAH RSVNKEDGSS PSVKDDFINR LLETGATESS SSNTCSNQKE ENRENTSSQL KQTLCNLVAA TNDLRCLKDE LYPTALRTGL DKDLSGQLAL
201: NELESEMKSF RVVLDDVLVK FKSLSRELQS HRDTDAKVRA DLKRIRGELE NEVVELQQCN GELSALRAER DATSGAFFAV LSPGNKLATR DKARDKQRDL
301: QNMESILKDL TVLASSRLQE LKDLHEERTK ILEKMSVLQS KSVTAISSSQ ACLSLKDQLR KSKEAVFKYM ALLEKLQVEK DSIFWREREM SIKSELVDVA
401: RRSSSVADSR IASLDVEIQK QLDDKSRIKT RLENISKERG RKEIFADMKA LVASFPGEMS SMRSQLENYK ETAGGIHSLR ADVQSLSVVL CRKTKECEAL
501: HLRSADYASQ LHDLNATVCD LKNSHEELKL FLDMYKREST DPRDIAEAKE QEYRAWAHVE SLKSSLDEQN LELRVKAANE AEAVSQQMLA AAEAEIADLR
601: QKIDDCKRDV VKHSDILKSK HEEHGTYLSE MQAIGSAYED IVPQNQQLLL QVTERDDYNI KLFLEGITSR QMQDALLIDK YIMDKDIQQA SASASFLSKK
701: SLRIEDQMRF CTEQYQRLAE DKYQKSVTHE ILQKKRADAV NGLEQARSKL GESHSKAEQS RVDYGALELE LEIERFNRRR IEEEVETVKT KVSRLRSLVE
801: GSSAIQKLRQ ELNEFKEILK CKACNDRSKE VVITKCFHLF CNPCVLKITG TRQRKCPTCS ASFGPNDIKP IYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.