Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G274100.2 | Wheat | nucleus | 93.01 | 92.69 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 92.55 | 92.24 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 92.55 | 92.24 |
| Os04t0550400-01 | Rice | nucleus | 61.86 | 61.09 |
| EER88892 | Sorghum | cytosol | 56.93 | 58.4 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 24.97 | 57.07 |
| Zm00001d014640_P035 | Maize | cytosol | 56.13 | 56.98 |
| Zm00001d036507_P003 | Maize | cytosol | 54.07 | 54.19 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 53.38 | 52.89 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 28.18 | 48.62 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 48.22 | 47.95 |
| Solyc11g013370.1.1 | Tomato | nucleus | 43.3 | 44.63 |
| KRH30315 | Soybean | nucleus | 44.67 | 44.37 |
| KRH75261 | Soybean | nucleus | 44.44 | 44.09 |
| AT2G44950.1 | Thale cress | nucleus | 42.27 | 42.03 |
| CDY18962 | Canola | nucleus | 41.7 | 41.7 |
| CDX74700 | Canola | nucleus | 41.7 | 41.32 |
| Bra040332.1-P | Field mustard | nucleus | 41.47 | 41.18 |
| CDY37020 | Canola | nucleus | 41.24 | 41.05 |
| CDY27400 | Canola | nucleus | 40.66 | 40.66 |
| Bra004879.1-P | Field mustard | nucleus | 41.81 | 40.38 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 15.81 | 23.79 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | UniProt:A0A287E4Z1 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006464 |
| GO:GO:0006513 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009817 | GO:GO:0009965 |
| GO:GO:0009987 | GO:GO:0010162 | GO:GO:0010228 | GO:GO:0010389 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0033523 | GO:GO:0042803 | GO:GO:0045087 | GO:GO:0051301 |
| GO:GO:0051781 | EnsemblPlantsGene:HORVU0Hr1G018210 | EnsemblPlants:HORVU0Hr1G018210.6 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13923 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| SUPFAM:SSF57997 | UniParc:UPI000B46133D | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
No Description!
Coordinates
chrchrUn:+:94298244..94309965
Molecular Weight (calculated)
99282.6 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.729
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGEPDRK RRLSGSFAQG VDAAPPAKRP ALPPSSDDKK LDFAVIKYRN QKLSEQLEVH KSEYHALEGK FDDLKQKQKS HHETQDLVNK SWQHLVRDLK
101: DMSVCKSGSQ NSSCSAVPSN VSTDGACIRK DEDFLSRLGE TGATESSGCH LEKHACSSTA DVLQNILFSS NDSRQKLPLD HFAALPEDER IRELQSTASE
201: ISLELNDAIQ ALGDLHLKHR QLTEKHHEER YLNARRKAEQ KRLKEELTSA VAELEESNHK LAVLKAQGDT THGTPILFPT LGNKSLHQDN VRDKQKELQD
301: LGASHKEFTG LISQRLVEIR RLHEERIAIL NKLATFQNTL TDLKSISSSK AFQVLKDQLQ KSQAELDHCR ALLEKLQVNK DKLIWQEREI NVKVDLSGIL
401: HRVSLNCESN LEVLDQNLGK VVDEKNMLAM KLEESSREPD RNQIISEFKA LVSSLPGEMG AMQTELSKYK DDASELHSLR AEVRSISDIL ARNEHAINKS
501: LCKSSRAGSE VRDLRSRVCE LRQTNCELKL FVEMYKREST DSRDVLESKY GEYCEWAHVH SLKFFLDDNR LEQRVKAAIE AEATSQQKLA SGEAEIAELR
601: GKMESARRDI GNLSELLKSK HEEGEAYLSE IESIGQAYED IQTQNQQLLQ QIIERDDHNT KIFMEGVKVK QAQDTLHLEV CNLNRNLRQA KNLMDLYKDK
701: IAQLDDKLKV WSEQTARLSE DERRHSVSSG NAQRKLADVQ GEVQQLRESM DQVQSKVGRS RVEVAGLLVE LEKDRFSKRR IEDDLESLSR KASSLRAKTQ
801: ASSVLEKIHQ EVSEYRGILK CGVCRDRQKE VVITKCYHLF CNDCIQKLLR NRQRRCPSCA LSFGANDVKP IYI
101: DMSVCKSGSQ NSSCSAVPSN VSTDGACIRK DEDFLSRLGE TGATESSGCH LEKHACSSTA DVLQNILFSS NDSRQKLPLD HFAALPEDER IRELQSTASE
201: ISLELNDAIQ ALGDLHLKHR QLTEKHHEER YLNARRKAEQ KRLKEELTSA VAELEESNHK LAVLKAQGDT THGTPILFPT LGNKSLHQDN VRDKQKELQD
301: LGASHKEFTG LISQRLVEIR RLHEERIAIL NKLATFQNTL TDLKSISSSK AFQVLKDQLQ KSQAELDHCR ALLEKLQVNK DKLIWQEREI NVKVDLSGIL
401: HRVSLNCESN LEVLDQNLGK VVDEKNMLAM KLEESSREPD RNQIISEFKA LVSSLPGEMG AMQTELSKYK DDASELHSLR AEVRSISDIL ARNEHAINKS
501: LCKSSRAGSE VRDLRSRVCE LRQTNCELKL FVEMYKREST DSRDVLESKY GEYCEWAHVH SLKFFLDDNR LEQRVKAAIE AEATSQQKLA SGEAEIAELR
601: GKMESARRDI GNLSELLKSK HEEGEAYLSE IESIGQAYED IQTQNQQLLQ QIIERDDHNT KIFMEGVKVK QAQDTLHLEV CNLNRNLRQA KNLMDLYKDK
701: IAQLDDKLKV WSEQTARLSE DERRHSVSSG NAQRKLADVQ GEVQQLRESM DQVQSKVGRS RVEVAGLLVE LEKDRFSKRR IEDDLESLSR KASSLRAKTQ
801: ASSVLEKIHQ EVSEYRGILK CGVCRDRQKE VVITKCYHLF CNDCIQKLLR NRQRRCPSCA LSFGANDVKP IYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.