Factsheet for HORVU1Hr1G028330.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G066410.6
HORVU4Hr1G014230.4
HORVU4Hr1G090300.6
HORVU5Hr1G053150.1
HORVU5Hr1G065380.2
HORVU5Hr1G065420.15
HORVU6Hr1G028790.1
HORVU7Hr1G113830.1
HORVU7Hr1G113850.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	HORVU5Hr1G065380.2	AT2G25000.1	21798944
AT4G22720.1	HORVU5Hr1G065420.15	AT2G25000.1	21798944
AT4G22720.1	HORVU6Hr1G028790.1	AT2G25000.1	21798944
AT4G22720.1	HORVU7Hr1G113830.1	AT2G25000.1	21798944
AT4G22720.1	HORVU7Hr1G113850.4	AT2G25000.1	21798944
AT4G22720.1	HORVU3Hr1G066410.6	AT4G00980.1	21798944
AT4G22720.1	HORVU5Hr1G053150.1	AT5G06780.1	21798944
AT4G22720.1	HORVU4Hr1G014230.4	AT5G19150.1	21798944
AT4G22720.1	HORVU4Hr1G090300.6	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G123600.1	Wheat	plastid	86.31	97.64
TraesCS1B01G143400.1	Wheat	plastid	86.08	97.38
TraesCS1D01G130800.1	Wheat	plastid	85.85	97.11
OQU77586	Sorghum	plastid	79.81	90.29
Zm00001d037675_P001	Maize	extracellular	78.89	89.24
GSMUA_Achr7P10790_001	Banana	cytosol	67.05	83.29
KRG97103	Soybean	cytosol	67.05	82.1
KRH03601	Soybean	cytosol	66.13	80.97
PGSC0003DMT400027091	Potato	cytosol	64.27	80.06
Solyc02g068750.1.1	Tomato	cytosol	64.27	80.06
VIT_05s0102g00570.t01	Wine grape	cytosol	34.34	78.72
AT4G22720.1	Thale cress	cytosol	63.81	77.9
CDX82960	Canola	cytosol, mitochondrion	63.57	77.62
CDY67122	Canola	endoplasmic reticulum, extracellular	21.81	67.63
Bra013635.1-P	Field mustard	cytosol	65.2	66.27
CDX79172	Canola	cytosol	64.73	65.96
GSMUA_Achr10P...	Banana	cytosol	58.93	57.08
Bra020834.1-P	Field mustard	nucleus	10.9	47.96
HORVU3Hr1G029020.4	Barley	plastid	22.04	20.65

Protein Annotations

MapMan:16.6.2.2.1	Gene3D:3.30.420.40	UniProt:A0A287F0H4	GO:GO:0000408	GO:GO:0002949	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0046872	GO:GO:0061711	InterPro:Gcp-like_dom
EnsemblPlantsGene:HORVU1Hr1G028330	EnsemblPlants:HORVU1Hr1G028330.1	InterPro:KAE1/TsaD	InterPro:Kae1/OSGEP	HAMAP:MF_01446	PFAM:PF00814
PRINTS:PR00789	ScanProsite:PS01016	PANTHER:PTHR11735	PANTHER:PTHR11735:SF14	InterPro:Peptidase_M22_CS	SUPFAM:SSF53067
TIGRFAMs:TIGR00329	UniParc:UPI000B486A37	SEG:seg	:	:	:

Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287F0H4]

Coordinates

chrchr1H:-:152996178..153011137

Molecular Weight (calculated)

46286.6 Da

IEP (calculated)

5.385

GRAVY (calculated)

0.140

Length

431 amino acids

Sequence
(BLAST)

001: FYKTLWASIA WADTPGCLIW ASFIRTSYST THSLLPAHSG KPYRIAAAAA MASSSPPASS RPPGPFALGL ESSANKIGIG VVSISGQILS NPRHTYITPP
101: GHGFLPRETA QHHLVHLLPL LRAALAEADA SPADLACICY TMGPGIGGPL QVAAASARAL SLLWGKPLVA VNHCVAHIEM GRAVTGAVDP VVLYVSGGNT
201: QVIAYSEGRY RIFGETIDIA VGNCLDRFAR ILELSNDPSP GYNIEQLAKK GEKFIDLPYV VKGMDVSFSG ILSFIEAAAI EKLENNECTP ADLCYSLQET
301: LFAMLVEITE RAMAHCDSKD VLIVGGVGCN ERLQEMMRIM CSERGGRLFA TDDRYCIDNG AMIAYTGLLA YAHGVITPLE DSTFTQRFRT DEVHAIWREK
401: EVPVLNNMDS DTVAEVSIDG VSVPTPIAVD S

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.