Factsheet for Solyc02g068750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079860.2.1
Solyc03g063280.2.1
Solyc08g067340.2.1
Solyc08g067360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	Solyc08g067340.2.1	AT2G25000.1	21798944
AT4G22720.1	Solyc08g067360.2.1	AT2G25000.1	21798944
AT4G22720.1	Solyc03g063280.2.1	AT5G06780.1	21798944
AT4G22720.1	Solyc01g079860.2.1	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027091	Potato	cytosol	98.84	98.84
KRG97103	Soybean	cytosol	87.86	86.36
GSMUA_Achr7P10790_001	Banana	cytosol	86.42	86.17
KRH03601	Soybean	cytosol	87.57	86.08
AT4G22720.1	Thale cress	cytosol	85.84	84.14
CDX82960	Canola	cytosol, mitochondrion	85.55	83.85
VIT_00s2082g00010.t01	Wine grape	cytosol	34.1	78.15
OQU77586	Sorghum	plastid	81.21	73.75
Zm00001d037675_P001	Maize	extracellular	80.35	72.97
TraesCS1A01G123600.1	Wheat	plastid	80.35	72.97
TraesCS1D01G130800.1	Wheat	plastid	80.06	72.7
TraesCS1B01G143400.1	Wheat	plastid	79.77	72.44
CDX79172	Canola	cytosol	85.26	69.74
Bra013635.1-P	Field mustard	cytosol	84.97	69.34
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	80.06	64.27
CDY67122	Canola	endoplasmic reticulum, extracellular	25.72	64.03
GSMUA_Achr10P...	Banana	cytosol	74.57	57.98
Bra020834.1-P	Field mustard	nucleus	14.16	50.0
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	25.14	19.21

Protein Annotations

MapMan:16.6.2.2.1	Gene3D:3.30.420.40	GO:GO:0000408	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	GO:GO:0046872	GO:GO:0061711	InterPro:Gcp-like_dom	UniProt:K4B7K7
InterPro:KAE1/TsaD	InterPro:Kae1/OSGEP	HAMAP:MF_01446	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735
PANTHER:PTHR11735:SF14	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc02g068750.1	EnsemblPlants:Solyc02g068750.1.1	TIGRFAMs:TIGR00329	UniParc:UPI0002767CDF

Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:K4B7K7]

Coordinates

chr2:+:38678720..38679760

Molecular Weight (calculated)

37780.8 Da

IEP (calculated)

5.881

GRAVY (calculated)

-0.002

Length

346 amino acids

Sequence
(BLAST)

001: MKDKKLIALG FEGSANKIGV GVVAIDGTIL SNPRHTYITP PGQGFLPRET AQHHHQHILP LVKSALETAG VTPDEIDCIC YTKGPGMGAP LQVSAVVVRV
101: LSQLWKKPIV GVNHCVAHIE MGRIVTGAVD PVVLYVSGGN TQVIAYSEGR YRIFGETIDI AVGNCLDRFA RVLTLSNDPS PGYNIEQLAK KGEKFIELPY
201: VVKGMDISFS GILSFIEATA EEKLKNNECS PADLCFSLQE TLFAMLVEIT ERAMAHCDKK DVLIVGGVGC NERLQKMMQI MCSERGGKLF ATDDRYCVDN
301: GAMIAYTGLL EYANGASTPM EESTFTQRFR TDEVLATWRE KETAIA

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.