Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74700 | Canola | nucleus | 93.93 | 93.08 |
| CDY37020 | Canola | nucleus | 86.6 | 86.2 |
| AT2G44950.1 | Thale cress | nucleus | 86.03 | 85.54 |
| CDY27400 | Canola | nucleus | 85.34 | 85.34 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 54.18 | 53.87 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 21.88 | 50.0 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.11 | 49.59 |
| KRH30315 | Soybean | nucleus | 49.71 | 49.37 |
| KRH75261 | Soybean | nucleus | 49.71 | 49.32 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 43.18 | 42.79 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 41.7 | 41.7 |
| Os04t0550400-01 | Rice | nucleus | 41.58 | 41.06 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 40.78 | 40.92 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 40.66 | 40.8 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 40.89 | 40.75 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 40.78 | 40.64 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 40.78 | 40.64 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 40.44 | 40.57 |
| EER88892 | Sorghum | cytosol | 38.72 | 39.72 |
| Zm00001d014640_P035 | Maize | cytosol | 38.14 | 38.72 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 22.11 | 38.14 |
| Zm00001d036507_P003 | Maize | cytosol | 36.08 | 36.17 |
| CDY02453 | Canola | nucleus | 29.32 | 29.02 |
| CDY10575 | Canola | nucleus | 29.21 | 28.85 |
| CDY65754 | Canola | cytosol | 4.24 | 21.39 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | GO:A0A078G1U3 | UniProt:A0A078G1U3 | EnsemblPlants:CDY18962 | ProteinID:CDY18962 |
| ProteinID:CDY18962.1 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00006182001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEB36A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
BnaC04g03880DBnaC04g03880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1U3]
Coordinates
chrLK032090:+:681035..685781
Molecular Weight (calculated)
98924.4 Da
IEP (calculated)
7.722
GRAVY (calculated)
-0.656
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTGEPDRK KRHFSSISPT EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAHQ VECSILEDRL SQIKDKQLPY SSSLKTVHKS WDKLTDAVES
101: CSVRVSGSSS GSVNKEDVSS PDIKDDFINR LLETGATESS SSSICSNGME ENRGNNTSSQ VKQTLHNLVA ATNGVRCLKD ELYPTVLRTD LCGQQLALNE
201: LESEVKSFRV ALDDVLVKFK SLSRELQSYR DADARVRADL KRIRGELEDE VVELQQCNGD LSALRAERDA TAGAFFPVLS PGNKLASSEK TRDKQRDLQD
301: MERVLKELTV LASSRLQELK DLHEERTKIL EKVSILQNKS KSVRGISSSQ ACLSLKDQLK RSKEAVFKYM ALLEKLQVEK DSIFWKEREL NIKNELVDVS
401: RRIASVADSR MASLDVEIQK QHDEKARIKT RLGNISKERG RKELFADTKA LVSSFPGEMS SMRSQLSNYK ETAGGIHSLR ADAQSLSGVL CRKGKECEAL
501: HLRSAGYASQ LRDLNATVRD LKNSHEELQL FLDMFKREST DPRDIAEAKE QEYRAWAHVE SLKTSLDEQN LELRVKAANE AEAVSQQMLA AAEAEIADLR
601: QRMDDCKRDV AKHSDVLKSK NEEHGTYLSE IETIGSAYED IVPQNQQLLL QVTERDDYNI KLFLEGITSR QMQDALLIGK YIMDKDIQQA SASASFLSKR
701: SLRIEDQMRL CTDQYQRLAE DKYQKSITLE NLQKKRADVV NGLEQARSKL EESHSRVEKS RVDYGALELE LETERFNRRR IEEDMETAKK KVSRLRSLIE
801: GSSATQKLRQ ELSEFKEILK CKACNDRSKE VVITKCFHLF CNPCVQKIIG TRQRKCPTCS ASFGPNDIKP IYI
101: CSVRVSGSSS GSVNKEDVSS PDIKDDFINR LLETGATESS SSSICSNGME ENRGNNTSSQ VKQTLHNLVA ATNGVRCLKD ELYPTVLRTD LCGQQLALNE
201: LESEVKSFRV ALDDVLVKFK SLSRELQSYR DADARVRADL KRIRGELEDE VVELQQCNGD LSALRAERDA TAGAFFPVLS PGNKLASSEK TRDKQRDLQD
301: MERVLKELTV LASSRLQELK DLHEERTKIL EKVSILQNKS KSVRGISSSQ ACLSLKDQLK RSKEAVFKYM ALLEKLQVEK DSIFWKEREL NIKNELVDVS
401: RRIASVADSR MASLDVEIQK QHDEKARIKT RLGNISKERG RKELFADTKA LVSSFPGEMS SMRSQLSNYK ETAGGIHSLR ADAQSLSGVL CRKGKECEAL
501: HLRSAGYASQ LRDLNATVRD LKNSHEELQL FLDMFKREST DPRDIAEAKE QEYRAWAHVE SLKTSLDEQN LELRVKAANE AEAVSQQMLA AAEAEIADLR
601: QRMDDCKRDV AKHSDVLKSK NEEHGTYLSE IETIGSAYED IVPQNQQLLL QVTERDDYNI KLFLEGITSR QMQDALLIGK YIMDKDIQQA SASASFLSKR
701: SLRIEDQMRL CTDQYQRLAE DKYQKSITLE NLQKKRADVV NGLEQARSKL EESHSRVEKS RVDYGALELE LETERFNRRR IEEDMETAKK KVSRLRSLIE
801: GSSATQKLRQ ELSEFKEILK CKACNDRSKE VVITKCFHLF CNPCVQKIIG TRQRKCPTCS ASFGPNDIKP IYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.