Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30315 | Soybean | nucleus | 93.64 | 93.74 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 63.18 | 63.33 |
| Solyc11g013370.1.1 | Tomato | nucleus | 55.34 | 57.5 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 23.18 | 53.4 |
| AT2G44950.1 | Thale cress | nucleus | 50.23 | 50.34 |
| CDX74700 | Canola | nucleus | 50.0 | 49.94 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 49.77 | 49.72 |
| CDY18962 | Canola | nucleus | 49.32 | 49.71 |
| Bra040332.1-P | Field mustard | nucleus | 49.2 | 49.26 |
| CDY37020 | Canola | nucleus | 48.86 | 49.03 |
| CDY27400 | Canola | nucleus | 48.64 | 49.03 |
| Bra004879.1-P | Field mustard | nucleus | 49.77 | 48.45 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 44.55 | 45.06 |
| Os04t0550400-01 | Rice | nucleus | 44.89 | 44.68 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 43.98 | 44.48 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 44.09 | 44.44 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 43.86 | 44.37 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 43.75 | 43.95 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 25.23 | 43.87 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 43.64 | 43.84 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 43.52 | 43.72 |
| EER88892 | Sorghum | cytosol | 41.7 | 43.13 |
| Zm00001d014640_P035 | Maize | cytosol | 41.59 | 42.56 |
| Zm00001d036507_P003 | Maize | cytosol | 39.77 | 40.18 |
| KRH14812 | Soybean | nucleus | 32.73 | 32.69 |
| KRH73326 | Soybean | nucleus | 32.5 | 32.46 |
Protein Annotations
| EntrezGene:100790337 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EMBL:ACUP02000180 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 |
| EnsemblPlantsGene:GLYMA_01G074000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K7K2G2 | EnsemblPlants:KRH75261 | ProteinID:KRH75261 | ProteinID:KRH75261.1 |
| ProteinID:KRH75262.1 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002948D93 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:14637737..14679020
Molecular Weight (calculated)
101679.0 Da
IEP (calculated)
7.211
GRAVY (calculated)
-0.648
Length
880 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSMSDSDRK RRHFSSLSPT PAAAIAKKLP FLPVSEDKKL DIVVLQYQNQ KLTQKLETQK LEYAGLENRF SHLKERQKSY DSTLEVVKKS WEQLVDDLEL
101: CSERTRESSS KTNSRFASIM EDGSPSTVQD VFLSRLMQTD ATECASSYNF ANQMEEHREI TIEKAKSILK NMVTAVNNLW VLMDGLHTAL LKKLPGDDLC
201: RQKLSSDLEV IVKNLRLEFS ELHLKHKSLA SEFLIQRGLD AKNKADLERL KGELANTVKE LEEINHKLAT LKAERDAAKG AVLPVLNVGS THIPSDKIKD
301: KQKDLQDMES TLKELLDQGS ARLMDLKSLH EERIRILQQL CDLQNTLKNL KCITSSHAFQ LVKDQIEKSK SDVLEYQALY EKLQFEKDNL AWREREWYIK
401: NDFADVFQRS VAVSEFRVAD LRSEIQKKIE ERNVIENKLK EEAREPGRKQ IIAEFKSLVS SFPDEMGSMQ SQLRKYKESA SDIHSLRADV KSVSSILDRK
501: VKECDVFSVR SVGLVAEIKR LLGVVQDLRE SEWDLQLILE MFRRESIDSR DVMDAREAEY RAWAHVQSLK SSLDEHNLEH RVKTANEAEA RSQQKLAAAE
601: AEIADMRQKL ADSKRQMCDL SDVLKSKNKQ NENYLSEIES IGQAYDDMQT QNQHLLQQIT ERDDYNIKLV LEGVRARQKQ DSLLMEKRVI EQEIQQANIS
701: LNLYDVKATR IEDQLKFCLD QLQKLAEDKL QSSVTLENTQ RRLSNVRRQS QQVTDMVVEM QSKIGSNRVT RMELQVELEK ERFAKKRVEE NLEVARRKFT
801: CLKEQNEGFL VTEKLQQELE EYREIIKCSI CQDRAKEVVI TKCYHLFCYS CIQKVAGSRH RKCPQCGTSF GANDVKSVYL
101: CSERTRESSS KTNSRFASIM EDGSPSTVQD VFLSRLMQTD ATECASSYNF ANQMEEHREI TIEKAKSILK NMVTAVNNLW VLMDGLHTAL LKKLPGDDLC
201: RQKLSSDLEV IVKNLRLEFS ELHLKHKSLA SEFLIQRGLD AKNKADLERL KGELANTVKE LEEINHKLAT LKAERDAAKG AVLPVLNVGS THIPSDKIKD
301: KQKDLQDMES TLKELLDQGS ARLMDLKSLH EERIRILQQL CDLQNTLKNL KCITSSHAFQ LVKDQIEKSK SDVLEYQALY EKLQFEKDNL AWREREWYIK
401: NDFADVFQRS VAVSEFRVAD LRSEIQKKIE ERNVIENKLK EEAREPGRKQ IIAEFKSLVS SFPDEMGSMQ SQLRKYKESA SDIHSLRADV KSVSSILDRK
501: VKECDVFSVR SVGLVAEIKR LLGVVQDLRE SEWDLQLILE MFRRESIDSR DVMDAREAEY RAWAHVQSLK SSLDEHNLEH RVKTANEAEA RSQQKLAAAE
601: AEIADMRQKL ADSKRQMCDL SDVLKSKNKQ NENYLSEIES IGQAYDDMQT QNQHLLQQIT ERDDYNIKLV LEGVRARQKQ DSLLMEKRVI EQEIQQANIS
701: LNLYDVKATR IEDQLKFCLD QLQKLAEDKL QSSVTLENTQ RRLSNVRRQS QQVTDMVVEM QSKIGSNRVT RMELQVELEK ERFAKKRVEE NLEVARRKFT
801: CLKEQNEGFL VTEKLQQELE EYREIIKCSI CQDRAKEVVI TKCYHLFCYS CIQKVAGSRH RKCPQCGTSF GANDVKSVYL
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.