CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99148
KRH14812
KRH30315
KRH73326
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	KRG99148	AT1G14400.1	18849490
AT1G55250.1	KRH14812	AT1G55250.1	18849490
AT1G55250.1	KRH73326	AT1G55250.1	18849490
AT1G55250.1	KRH30315	AT2G44950.1	18849490
AT1G55250.1	KRH75261	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14812	Soybean	nucleus	95.12	95.12
VIT_06s0004g00950.t01	Wine grape	nucleus	65.83	65.98
Solyc01g006030.2.1	Tomato	nucleus	25.2	65.49
TraesCS3D01G465000.1	Wheat	nucleus	11.01	58.79
Bra030874.1-P	Field mustard	nucleus	55.85	55.78
CDY02453	Canola	nucleus	55.85	55.78
CDY10575	Canola	nucleus	55.96	55.77
AT1G55250.1	Thale cress	nucleus	56.3	55.11
GSMUA_Achr6P06310_001	Banana	nucleus	53.92	54.53
TraesCS3D01G462600.5	Wheat	nucleus	50.4	52.61
TraesCS3D01G466100.1	Wheat	nucleus	50.17	52.37
TraesCS3B01G511800.1	Wheat	nucleus	49.94	52.13
TraesCS3A01G467300.1	Wheat	nucleus	49.83	52.01
Solyc01g006040.2.1	Tomato	nucleus	32.58	51.71
Os10t0565600-01	Rice	nucleus	49.38	51.54
Zm00001d029490_P004	Maize	nucleus	47.9	47.15
CDY65754	Canola	cytosol	9.08	46.24
OQU92405	Sorghum	cytosol, mitochondrion	48.81	44.61
TraesCS3D01G465100.1	Wheat	cytosol	23.5	44.14
TraesCS3A01G469800.2	Wheat	cytosol	22.59	43.64
HORVU3Hr1G099950.5	Barley	cytosol	27.24	41.38
KRH30315	Soybean	nucleus	32.69	32.76
KRH75261	Soybean	nucleus	32.46	32.5

Protein Annotations

EntrezGene:100811776	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02001273	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1
EnsemblPlantsGene:GLYMA_02G267300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	UniProt:K7KAZ7	EnsemblPlants:KRH73326	ProteinID:KRH73326	ProteinID:KRH73326.1
PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002336E39	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:45160852..45170243

Molecular Weight (calculated)

100464.0 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.724

Length

881 amino acids

Sequence
(BLAST)

001: MENSDNDEPE KKRPHLTFVS SRTPRNSINT PATNKTADPG VLQFQNQQLV QQIDIQKHAL HDLEEKIREL KGKQSSYDDL LIALNQLWTQ LVDDMILLGI
101: RAGRGKGKDT LQHLTDIDNP QGSLPLCPAE DIFLCRLIQK DSIKGISDDE IISCVKEALA LRQSSTRELL KLLKDTIDYQ MERAGSIAQV LHEDLSSEDA
201: KIQMSKIDDM TKEEADNFRE VVDTLHAKHK EYTVAIQNSI NECSQDQSEI KRLAGELDEI VAELEESRRK LVNLEMQKDA AIGMNSPNAD AVNGNLSPEN
301: IADRTMGLRE LKDSIEEAKI VEADRLSELQ DAQEDNQTLT KQFQDLQNEL KDDKYVCTSR IYSLANDQLQ HWMTELTRYK TSVESLQAGN VHVAKWENEL
401: NLKLESADSA RQILGNSDHR IDDLELQLQK CIIEKNDLEI KMEEAKQDTG RKDIKSEFHV MASALSKEMG MMEGQLKRWK DAAHEAVSLR EKTHSLREAL
501: SMKTSELKSL TNKCAEQVLE IKSLKTLTEK LQKENQELEF ILDMHGQENY DKRHSEVRES ERKAHSQAEM LKNALDEHSL ELRVKAANEA EAACEQRLSA
601: AEAEIEDLRS KLDASERDIL ELTEAVKVKD AEAEAYISEI ETIGQAYEDM QTQNQNLLDQ VIERDDYNIK LVSDSVKTKQ AHNTLMSQKQ ALAKQLQQIN
701: TSIEHSKTRI THSEEQTKAI LSDAIKCNQE EKHLAVTLEF AKWELGDTEK ELKLLKSAVS SSEKEYDQIP KDTEAIQMEL ESERSLRKKL EEELGELNSK
801: IDELTSETGE TTIQKLEKEI RICKNMIKCT VCTDRPKEVV IVKCYHLFCN PCIQRNLELR HRKCPACGTA FGQSDVRFVK I

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.