CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDX84034
CDX96859
CDY02453
CDY10575
CDY18962
CDY27400
CDY37020
CDY39315
CDY65754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	CDX84034	AT1G14400.1	18849490
AT1G55250.1	CDX96859	AT1G14400.1	18849490
AT1G55250.1	CDY39315	AT1G14400.1	18849490
AT1G55250.1	CDY02453	AT1G55250.1	18849490
AT1G55250.1	CDY10575	AT1G55250.1	18849490
AT1G55250.1	CDY65754	AT1G55250.1	18849490
AT1G55250.1	CDX74700	AT2G44950.1	18849490
AT1G55250.1	CDY18962	AT2G44950.1	18849490
AT1G55250.1	CDY27400	AT2G44950.1	18849490
AT1G55250.1	CDY37020	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02453	Canola	nucleus	94.8	18.59
Bra030874.1-P	Field mustard	nucleus	94.22	18.48
CDY10575	Canola	nucleus	94.22	18.44
AT1G55250.1	Thale cress	nucleus	75.14	14.44
Solyc01g006040.2.1	Tomato	nucleus	45.09	14.05
TraesCS3A01G469800.2	Wheat	cytosol	35.26	13.38
TraesCS3D01G465100.1	Wheat	cytosol	34.1	12.58
HORVU3Hr1G099950.5	Barley	cytosol	36.42	10.86
VIT_06s0004g00950.t01	Wine grape	nucleus	54.91	10.81
KRH14812	Soybean	nucleus	47.98	9.42
KRH73326	Soybean	nucleus	46.24	9.08
GSMUA_Achr6P06310_001	Banana	nucleus	41.62	8.27
Os10t0565600-01	Rice	nucleus	37.57	7.7
TraesCS3B01G511800.1	Wheat	nucleus	36.99	7.58
Zm00001d029490_P004	Maize	nucleus	38.73	7.49
TraesCS3A01G467300.1	Wheat	nucleus	36.42	7.46
TraesCS3D01G462600.5	Wheat	nucleus	36.42	7.46
TraesCS3D01G466100.1	Wheat	nucleus	36.42	7.46
OQU92405	Sorghum	cytosol, mitochondrion	40.46	7.26
CDY18962	Canola	nucleus	21.39	4.24
CDX74700	Canola	nucleus	21.39	4.2
CDY27400	Canola	nucleus	20.23	4.01
CDY37020	Canola	nucleus	20.23	3.99
TraesCS3D01G465000.1	Wheat	nucleus	1.73	1.82
Solyc01g006030.2.1	Tomato	nucleus	1.16	0.59

Protein Annotations

EnsemblPlants:CDY65754	EnsemblPlantsGene:GSBRNA2T00048166001	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740
GO:GO:0019538	InterPro:E3_ubiquit_lig_Bre1	PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	ProteinID:CDY65754	ProteinID:CDY65754.1
SEG:seg	UniParc:UPI0004EED8EF	UniProt:A0A078JGF9	MapMan:35.1	:	:

Description

BnaAnng21040DBnaAnng21040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGF9]

Coordinates

chrLK034935:-:3962..4832

Molecular Weight (calculated)

19292.9 Da

IEP (calculated)

5.251

GRAVY (calculated)

-0.465

Length

173 amino acids

Sequence
(BLAST)

001: MESQDSDEPM QKKPHLLDSV SPTATAPNSS PSHPVAKSVD ATVLQLQNQK LVQQLDLQKK RMYDVETKIH ELHLNQSSYD DQLISVNRLW NQLVDDLVLL
101: GVRAGANQEA LKYLDIADKK RVPPCAADEM FLCRLLEVDS IGSSNSDEVV RKVEEALSLR HSSTVVLNPS TPH

Best Arabidopsis Sequence Match ( AT1G55250.1 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.