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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37020 Canola nucleus 99.43 99.66
AT2G44950.1 Thale cress nucleus 87.26 87.36
Bra004879.1-P Field mustard nucleus 86.69 84.29
VIT_15s0021g02140.t01 Wine grape nucleus 54.38 54.44
Solyc11g013370.1.1 Tomato nucleus 48.46 50.3
GSMUA_Achr4P26970_001 Banana nucleus 21.73 50.0
KRH30315 Soybean nucleus 49.49 49.49
KRH75261 Soybean nucleus 49.26 49.2
GSMUA_Achr1P01610_001 Banana nucleus 43.34 43.25
HORVU0Hr1G018210.6 Barley nucleus 41.18 41.47
Os04t0550400-01 Rice nucleus 41.64 41.4
TraesCS3B01G401200.2 Wheat nucleus 40.96 41.38
TraesCS3D01G362300.2 Wheat nucleus 40.96 41.38
TraesCS6B01G274100.2 Wheat nucleus 40.96 41.1
TraesCS3A01G369300.2 Wheat nucleus 40.5 40.92
TraesCS6D01G233000.5 Wheat nucleus 40.73 40.87
TraesCS6A01G251200.2 Wheat nucleus 40.61 40.75
EER88892 Sorghum cytosol 38.57 39.84
Zm00001d014640_P035 Maize cytosol 38.23 39.07
GSMUA_Achr4P26960_001 Banana nucleus 22.07 38.34
Zm00001d036507_P003 Maize cytosol 36.29 36.62
Bra030874.1-P Field mustard nucleus 27.53 27.44
Protein Annotations
MapMan:19.2.2.1.5.3.2Gene3D:3.30.40.10EnsemblPlantsGene:Bra040332EnsemblPlants:Bra040332.1EnsemblPlants:Bra040332.1-Pncoils:Coil
InterPro:E3_ubiquit_lig_Bre1GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0010390GO:GO:0016043GO:GO:0016740GO:GO:0019538
InterPro:IPR001841InterPro:IPR013083UniProt:M4FGV4PFAM:PF13920ScanProsite:PS00518PFscan:PS50089
PANTHER:PTHR23163PANTHER:PTHR23163:SF3SMART:SM00184SUPFAM:SSF57850UniParc:UPI0002544251InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSSEG:seg:::
Description
AT2G44950 (E=0.0) RDO4, HUB1 | HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding
Coordinates
chrA04:-:18448592..18453351
Molecular Weight (calculated)
99824.6 Da
IEP (calculated)
7.086
GRAVY (calculated)
-0.632
Length
879 amino acids
Sequence
(BLAST)
001: MASTGEADRK KRLFSSISTT ETAAVVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDRL SKIKDKQLPF SSCLKTVHKS WEKLTAEVES
101: CSIRVSDSSS GAHGSVNKED GSSPAVKDDF INRLLETGAT ESSSSNTCSN QKEENRENTS SQLTQTLCNL VAATNDLRCL KDELYPTALR TGLDKDLCGQ
201: QLALNELESE MKSFRVVLDD VLVKFKSLSR ELQSHRDTDA KVRADLKRIR GELENEVVEL QQCNGELSAL RAERDATAGA FFPVLSPGNK LATRDKARDK
301: QRDLQDMESI LKDLTVLASS RLQELKDLHE ERTKILEKMS VLQNKSNSVT SISSSKACLS LKDQLRKSKE AVFKYMALLE KLQVEKDSIF WREREISIKN
401: ELVDVARRSS SVADSRMASL DVEIQKQVDY KSRIKTRLEN ISKERGRKEI FADMKALVAS FPGEMSSMRS QLENYKETAG GIHSLRADVQ SLSGVLCRKT
501: KECEALQLRS ADYASQLHDL NATVGDLKNS HEELKLFLDM YKRESTDPRD IAEAKEQEYR AWARVQSLKS SLDEQNLELR VKAANEAEAV SQQMLAAAEA
601: EIADLRQKID DCKRDVVKHS DILKSKHEEH GTYLSEMQAI GSAYEDIVPQ NQQLLLQVTE RDDYNIKLFL EGITSRQMQD ALLIDKYIMD KDIQQASASA
701: SFLSKKSLRI EDQMRFCTEQ YQRLAEDRYQ KSSTHEILQK KRADVVNGLE QARSKLEESH SKVEQSRVDY GALELELEIE RFNRRRIEEE VETVKTKVSR
801: LRSLVEGSSA IQKLRQELNE FKEILKCKAC NDRSKEVVIT KCFHLFCNPC VLKITGTRQR KCPTCSASFG PNDIKPIYI
Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.