Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY37020 | Canola | nucleus | 99.43 | 99.66 |
AT2G44950.1 | Thale cress | nucleus | 87.26 | 87.36 |
Bra004879.1-P | Field mustard | nucleus | 86.69 | 84.29 |
VIT_15s0021g02140.t01 | Wine grape | nucleus | 54.38 | 54.44 |
Solyc11g013370.1.1 | Tomato | nucleus | 48.46 | 50.3 |
GSMUA_Achr4P26970_001 | Banana | nucleus | 21.73 | 50.0 |
KRH30315 | Soybean | nucleus | 49.49 | 49.49 |
KRH75261 | Soybean | nucleus | 49.26 | 49.2 |
GSMUA_Achr1P01610_001 | Banana | nucleus | 43.34 | 43.25 |
HORVU0Hr1G018210.6 | Barley | nucleus | 41.18 | 41.47 |
Os04t0550400-01 | Rice | nucleus | 41.64 | 41.4 |
TraesCS3B01G401200.2 | Wheat | nucleus | 40.96 | 41.38 |
TraesCS3D01G362300.2 | Wheat | nucleus | 40.96 | 41.38 |
TraesCS6B01G274100.2 | Wheat | nucleus | 40.96 | 41.1 |
TraesCS3A01G369300.2 | Wheat | nucleus | 40.5 | 40.92 |
TraesCS6D01G233000.5 | Wheat | nucleus | 40.73 | 40.87 |
TraesCS6A01G251200.2 | Wheat | nucleus | 40.61 | 40.75 |
EER88892 | Sorghum | cytosol | 38.57 | 39.84 |
Zm00001d014640_P035 | Maize | cytosol | 38.23 | 39.07 |
GSMUA_Achr4P26960_001 | Banana | nucleus | 22.07 | 38.34 |
Zm00001d036507_P003 | Maize | cytosol | 36.29 | 36.62 |
Bra030874.1-P | Field mustard | nucleus | 27.53 | 27.44 |
Protein Annotations
MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EnsemblPlantsGene:Bra040332 | EnsemblPlants:Bra040332.1 | EnsemblPlants:Bra040332.1-P | ncoils:Coil |
InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 |
InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M4FGV4 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 |
PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002544251 | InterPro:Znf_RING |
InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
AT2G44950 (E=0.0) RDO4, HUB1 | HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding
Coordinates
chrA04:-:18448592..18453351
Molecular Weight (calculated)
99824.6 Da
IEP (calculated)
7.086
GRAVY (calculated)
-0.632
Length
879 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEADRK KRLFSSISTT ETAAVVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDRL SKIKDKQLPF SSCLKTVHKS WEKLTAEVES
101: CSIRVSDSSS GAHGSVNKED GSSPAVKDDF INRLLETGAT ESSSSNTCSN QKEENRENTS SQLTQTLCNL VAATNDLRCL KDELYPTALR TGLDKDLCGQ
201: QLALNELESE MKSFRVVLDD VLVKFKSLSR ELQSHRDTDA KVRADLKRIR GELENEVVEL QQCNGELSAL RAERDATAGA FFPVLSPGNK LATRDKARDK
301: QRDLQDMESI LKDLTVLASS RLQELKDLHE ERTKILEKMS VLQNKSNSVT SISSSKACLS LKDQLRKSKE AVFKYMALLE KLQVEKDSIF WREREISIKN
401: ELVDVARRSS SVADSRMASL DVEIQKQVDY KSRIKTRLEN ISKERGRKEI FADMKALVAS FPGEMSSMRS QLENYKETAG GIHSLRADVQ SLSGVLCRKT
501: KECEALQLRS ADYASQLHDL NATVGDLKNS HEELKLFLDM YKRESTDPRD IAEAKEQEYR AWARVQSLKS SLDEQNLELR VKAANEAEAV SQQMLAAAEA
601: EIADLRQKID DCKRDVVKHS DILKSKHEEH GTYLSEMQAI GSAYEDIVPQ NQQLLLQVTE RDDYNIKLFL EGITSRQMQD ALLIDKYIMD KDIQQASASA
701: SFLSKKSLRI EDQMRFCTEQ YQRLAEDRYQ KSSTHEILQK KRADVVNGLE QARSKLEESH SKVEQSRVDY GALELELEIE RFNRRRIEEE VETVKTKVSR
801: LRSLVEGSSA IQKLRQELNE FKEILKCKAC NDRSKEVVIT KCFHLFCNPC VLKITGTRQR KCPTCSASFG PNDIKPIYI
101: CSIRVSDSSS GAHGSVNKED GSSPAVKDDF INRLLETGAT ESSSSNTCSN QKEENRENTS SQLTQTLCNL VAATNDLRCL KDELYPTALR TGLDKDLCGQ
201: QLALNELESE MKSFRVVLDD VLVKFKSLSR ELQSHRDTDA KVRADLKRIR GELENEVVEL QQCNGELSAL RAERDATAGA FFPVLSPGNK LATRDKARDK
301: QRDLQDMESI LKDLTVLASS RLQELKDLHE ERTKILEKMS VLQNKSNSVT SISSSKACLS LKDQLRKSKE AVFKYMALLE KLQVEKDSIF WREREISIKN
401: ELVDVARRSS SVADSRMASL DVEIQKQVDY KSRIKTRLEN ISKERGRKEI FADMKALVAS FPGEMSSMRS QLENYKETAG GIHSLRADVQ SLSGVLCRKT
501: KECEALQLRS ADYASQLHDL NATVGDLKNS HEELKLFLDM YKRESTDPRD IAEAKEQEYR AWARVQSLKS SLDEQNLELR VKAANEAEAV SQQMLAAAEA
601: EIADLRQKID DCKRDVVKHS DILKSKHEEH GTYLSEMQAI GSAYEDIVPQ NQQLLLQVTE RDDYNIKLFL EGITSRQMQD ALLIDKYIMD KDIQQASASA
701: SFLSKKSLRI EDQMRFCTEQ YQRLAEDRYQ KSSTHEILQK KRADVVNGLE QARSKLEESH SKVEQSRVDY GALELELEIE RFNRRRIEEE VETVKTKVSR
801: LRSLVEGSSA IQKLRQELNE FKEILKCKAC NDRSKEVVIT KCFHLFCNPC VLKITGTRQR KCPTCSASFG PNDIKPIYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.