CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
EER90511
EES02002
EES02004
EES02317
EES07768
EES07816
EES14698
KXG21417
OQU77586
OQU86794
OQU92405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44950.1	EER90511	AT1G01630.1	21798944
AT2G44950.1	EES02002	AT1G01630.1	21798944
AT2G44950.1	EES02004	AT1G01630.1	21798944
AT2G44950.1	EES02317	AT1G19980.1	21798944
AT2G44950.1	OQU86794	AT1G19980.1	21798944
AT2G44950.1	OQU92405	AT1G55250.1	18849490
AT2G44950.1	EES07816	AT2G22640.1	21798944
AT2G44950.1	EES14698	AT2G32980.1	21798944
AT2G44950.1	EER88892	AT2G44950.1	18849490
AT2G44950.1	KXG21417	AT3G10970.1	21798944
AT2G44950.1	EES07768	AT3G54826.1	21798944
AT2G44950.1	OQU77586	AT4G22720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014640_P035	Maize	cytosol	92.13	91.16
Zm00001d036507_P003	Maize	cytosol	89.07	87.03
Os04t0550400-01	Rice	nucleus	68.74	66.18
TraesCS3A01G369300.2	Wheat	nucleus	60.99	59.66
TraesCS3D01G362300.2	Wheat	nucleus	60.52	59.2
TraesCS3B01G401200.2	Wheat	nucleus	60.28	58.97
TraesCS6B01G274100.2	Wheat	nucleus	60.52	58.79
TraesCS6D01G233000.5	Wheat	nucleus	60.16	58.45
TraesCS6A01G251200.2	Wheat	nucleus	59.69	57.99
HORVU0Hr1G018210.6	Barley	nucleus	58.4	56.93
GSMUA_Achr4P26970_001	Banana	nucleus	25.03	55.76
GSMUA_Achr1P01610_001	Banana	nucleus	52.41	50.62
GSMUA_Achr4P26960_001	Banana	nucleus	26.2	44.07
VIT_15s0021g02140.t01	Wine grape	nucleus	45.36	43.96
Solyc11g013370.1.1	Tomato	nucleus	42.89	43.09
KRH30315	Soybean	nucleus	44.18	42.78
KRH75261	Soybean	nucleus	43.13	41.7
AT2G44950.1	Thale cress	nucleus	40.19	38.95
CDY18962	Canola	nucleus	39.72	38.72
Bra040332.1-P	Field mustard	nucleus	39.84	38.57
CDY37020	Canola	nucleus	39.72	38.54
CDY27400	Canola	nucleus	39.25	38.26
CDX74700	Canola	nucleus	39.37	38.02
Bra004879.1-P	Field mustard	nucleus	39.13	36.84
OQU92405	Sorghum	cytosol, mitochondrion	29.61	26.14

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:C5Z8U7	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	EnsemblPlants:EER88892
ProteinID:EER88892	ProteinID:EER88892.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006464	GO:GO:0006513	GO:GO:0006950	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653
GO:GO:0009791	GO:GO:0009817	GO:GO:0009965	GO:GO:0009987	GO:GO:0010162	GO:GO:0010228
GO:GO:0010389	GO:GO:0010390	GO:GO:0016043	GO:GO:0016049	GO:GO:0016740	GO:GO:0019538
GO:GO:0033523	GO:GO:0040007	GO:GO:0042803	GO:GO:0045087	GO:GO:0051301	GO:GO:0051781
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163
PANTHER:PTHR23163:SF3	SMART:SM00184	EnsemblPlantsGene:SORBI_3010G247800	SUPFAM:SSF57850	unigene:Sbi.11202	UniParc:UPI0007F21AD3
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:58771249..58782848

Molecular Weight (calculated)

97274.4 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.620

Length

851 amino acids

Sequence
(BLAST)

001: MSTCLHVQDP RNIAMSRPLD FAVLKYKNQK LAEQLEVHKF EFRALESRFN DLKEKQKTHN ETLVLVKSYW ERLVADLGIV PVSKSESSHS SCSTGNNNIR
101: KDFLNGLLEA GATESSGSPN CQLGNDVSSE QSTTIDILQK LFLPSNGPWH VNNEFVSAAL TKLPENEHSR QLHSATSDVL SKLHVVMCAV DNLHLKHRQL
201: AGNYQKQRDL NAWNRAEQKR LKEELTSVVA KLEGSKQKLA VLKAQGDNKQ ATPILVPTLG NKNMTAEKVR DKRTELQDLE ATHKELMELT SKRLEEIRRL
301: HTERIEILNK LAAFQNILMD FKSIRSSKAF QLVNDQLQKS QAELDDQQTL LEKLQVEMDT FVWRERQFNQ KVDLAEIPQK VSAYCVSRIA DLEKDVQKLC
401: NEKNMLVLKL EEASREPGRN QVISEFKALV SSLPREMGAV QSELSKHKDA SLQLHSLRAE VHSLCSTRTR KEQEIEEASC RSAHAGSDIS QLQSLVRELR
501: ENTQELKLFV ELYKHESTDS RQLMESRERE LAEWARVHVL KYSLNESKLE QRVIAANEAE AISQQRLATA EAEIAELGQK LETSRRDLVK QSDILKSKHE
601: ECEAYVVEIE SIGHAYEDIM SQNQQLLQQI IERDDHNTKL FMEGVKAKQS HDALHLEMCS LQRNLQHAST LMDLCNQKII RLEDQLRGWS ERLRRLSEDG
701: MQQSMSLGNS QRKLAGMHGE APKLRQSMDV LQAKVGSNRL EVAELLIELE KERFSKKRIE DDLDLMSSKA NSLREKTDNS AVLQKLLHEA KEYRGILKCG
801: ICHDRQKEVV IAKCYHLFCN QCIQKSLGSR QKRCPSCGLS FGVNDVKPIY I

Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)

001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI

Arabidopsis Description

HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.