Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88892 | Sorghum | cytosol | 87.03 | 89.07 |
| Zm00001d014640_P035 | Maize | cytosol | 85.88 | 86.98 |
| Os04t0550400-01 | Rice | nucleus | 64.06 | 63.12 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 56.95 | 57.01 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 56.6 | 56.67 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 56.26 | 56.32 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 56.26 | 55.94 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 55.91 | 55.59 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 55.22 | 54.91 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 54.19 | 54.07 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 23.08 | 52.62 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 48.22 | 47.67 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 24.57 | 42.29 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 42.59 | 42.26 |
| Solyc11g013370.1.1 | Tomato | nucleus | 40.53 | 41.68 |
| KRH30315 | Soybean | nucleus | 41.33 | 40.96 |
| KRH75261 | Soybean | nucleus | 40.18 | 39.77 |
| AT2G44950.1 | Thale cress | nucleus | 36.74 | 36.45 |
| Bra040332.1-P | Field mustard | nucleus | 36.62 | 36.29 |
| CDY37020 | Canola | nucleus | 36.51 | 36.26 |
| CDY18962 | Canola | nucleus | 36.17 | 36.08 |
| CDX74700 | Canola | nucleus | 36.28 | 35.87 |
| CDY27400 | Canola | nucleus | 35.94 | 35.85 |
| Bra004879.1-P | Field mustard | nucleus | 36.05 | 34.73 |
| Zm00001d029490_P004 | Maize | nucleus | 27.32 | 26.59 |
Protein Annotations
| EntrezGene:103629598 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | UniProt:A0A1D6LNS1 | ProteinID:AQK81194.1 | ProteinID:AQK81208.1 |
| ProteinID:AQK81214.1 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0016874 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13923 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004DEC252 | EnsemblPlantsGene:Zm00001d036507 | EnsemblPlants:Zm00001d036507_P003 | EnsemblPlants:Zm00001d036507_T003 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase BRE1-like 1
Coordinates
chr6:-:90881545..90893674
Molecular Weight (calculated)
98744.0 Da
IEP (calculated)
7.166
GRAVY (calculated)
-0.530
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTCLHVQDP RNIAMSRPLD FAVLNYKNQR LAEQLEVHKF EFRALESRFN DLKEKQRTHN ETLILVENYW ERLVAELGIV PVCKSESSHS SCSTGNNNIR
101: KDGICFRLGA GFLNGLLEAG ASATESSGFS NCQLGNDVSS EESTTIDILQ KMFLPSSGPW HANNEVVSAA LKKLPENEHS RQLHSATNDV LSKLHVVMRA
201: VDNLHLKHMQ LAGNYQKQRD SSAWNRAEQK RLKEELTSVV AKLEESKQKL AVLKAQGDNK QATPILVPML GKKTAEKVGD KQTELQDLEA THKELMESIS
301: KRLEEIRRLH TERIGILNNL ATFQNILTDF KSIHSSKAFQ LVNDQLQKSQ AELDGHQTLL EKLQVDMDTF VWRERQFNQK VDLAEISQKV SAYYVSRIAD
401: LEKDVQKLCN EKNMLVLKLE GALREPGRNQ VISEFKALVS SLPREMGAVQ TELSKHKDAS LQLHSLRAEV HSLSSIRTRK EQEIEETSRS AHAGSDISQL
501: QSLVHELREN TQELKLFVEL YKHDSADSRQ LMESRDRELA ELAGVHVLRY SLNESKLEQR VIAANEAEAI SQQRLATAEA EVAELGQKLE TSRSKVISSA
601: GFLWLRNLVK QSDILKSKHE ECEAYMVEIE SIGHAYEDIM SQNQQLLQQI IERDDHNTKL FMEGVKAKQS HDALHLEVCS LQRNLQHAST LMDLCNQKLI
701: HLEDKLRGWS ERLRRLSEDG MQQSISLGIS QTKLTGMHGE APKLGQALNV LQAKVGSNRL EVAELLIELE TERFSKKRLD DDLDLMSSKA SSLREKADNS
801: QVLQKLLHEA KEYRGILKCG ICHDRQKEVV IAKCYHLFCN QCIQKSLGSR QKRCPSCGLS FGVNDVKPIY I
101: KDGICFRLGA GFLNGLLEAG ASATESSGFS NCQLGNDVSS EESTTIDILQ KMFLPSSGPW HANNEVVSAA LKKLPENEHS RQLHSATNDV LSKLHVVMRA
201: VDNLHLKHMQ LAGNYQKQRD SSAWNRAEQK RLKEELTSVV AKLEESKQKL AVLKAQGDNK QATPILVPML GKKTAEKVGD KQTELQDLEA THKELMESIS
301: KRLEEIRRLH TERIGILNNL ATFQNILTDF KSIHSSKAFQ LVNDQLQKSQ AELDGHQTLL EKLQVDMDTF VWRERQFNQK VDLAEISQKV SAYYVSRIAD
401: LEKDVQKLCN EKNMLVLKLE GALREPGRNQ VISEFKALVS SLPREMGAVQ TELSKHKDAS LQLHSLRAEV HSLSSIRTRK EQEIEETSRS AHAGSDISQL
501: QSLVHELREN TQELKLFVEL YKHDSADSRQ LMESRDRELA ELAGVHVLRY SLNESKLEQR VIAANEAEAI SQQRLATAEA EVAELGQKLE TSRSKVISSA
601: GFLWLRNLVK QSDILKSKHE ECEAYMVEIE SIGHAYEDIM SQNQQLLQQI IERDDHNTKL FMEGVKAKQS HDALHLEVCS LQRNLQHAST LMDLCNQKLI
701: HLEDKLRGWS ERLRRLSEDG MQQSISLGIS QTKLTGMHGE APKLGQALNV LQAKVGSNRL EVAELLIELE TERFSKKRLD DDLDLMSSKA SSLREKADNS
801: QVLQKLLHEA KEYRGILKCG ICHDRQKEVV IAKCYHLFCN QCIQKSLGSR QKRCPSCGLS FGVNDVKPIY I
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.