Factsheet for Solyc11g013370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006030.2.1
Solyc01g006040.2.1
Solyc02g067420.2.1
Solyc02g068750.1.1
Solyc02g087750.2.1
Solyc03g043720.2.1
Solyc04g081450.2.1
Solyc05g053250.2.1
Solyc06g050310.2.1
Solyc08g013990.2.1
Solyc11g010680.2.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44950.1	Solyc02g067420.2.1	AT1G14400.1	18849490
AT2G44950.1	Solyc02g087750.2.1	AT1G14400.1	18849490
AT2G44950.1	Solyc04g081450.2.1	AT1G19980.1	21798944
AT2G44950.1	Solyc01g006030.2.1	AT1G55250.1	18849490
AT2G44950.1	Solyc01g006040.2.1	AT1G55250.1	18849490
AT2G44950.1	Solyc03g043720.2.1	AT2G22640.1	21798944
AT2G44950.1	Solyc08g013990.2.1	AT2G32980.1	21798944
AT2G44950.1	Solyc11g013370.1.1	AT2G44950.1	18849490
AT2G44950.1	Solyc06g050310.2.1	AT3G10970.1	21798944
AT2G44950.1	Solyc05g053250.2.1	AT3G54826.1	21798944
AT2G44950.1	Solyc02g068750.1.1	AT4G22720.1	21798944
AT2G44950.1	Solyc11g010680.2.1	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02140.t01	Wine grape	nucleus	63.16	60.93
GSMUA_Achr4P26970_001	Banana	nucleus	25.38	56.28
KRH30315	Soybean	nucleus	58.09	55.97
KRH75261	Soybean	nucleus	57.5	55.34
CDY37020	Canola	nucleus	50.3	48.57
Bra040332.1-P	Field mustard	nucleus	50.3	48.46
AT2G44950.1	Thale cress	nucleus	50.18	48.41
CDX74700	Canola	nucleus	50.06	48.13
CDY18962	Canola	nucleus	49.59	48.11
GSMUA_Achr1P01610_001	Banana	nucleus	49.94	48.01
CDY27400	Canola	nucleus	49.47	48.0
Bra004879.1-P	Field mustard	nucleus	49.7	46.57
TraesCS3B01G401200.2	Wheat	nucleus	44.75	43.56
HORVU0Hr1G018210.6	Barley	nucleus	44.63	43.3
TraesCS3A01G369300.2	Wheat	nucleus	44.16	42.99
EER88892	Sorghum	cytosol	43.09	42.89
Os04t0550400-01	Rice	nucleus	44.75	42.87
Solyc01g006030.2.1	Tomato	nucleus	17.12	42.77
TraesCS3D01G362300.2	Wheat	nucleus	43.92	42.76
TraesCS6D01G233000.5	Wheat	nucleus	44.04	42.58
Zm00001d014640_P035	Maize	cytosol	43.21	42.56
TraesCS6A01G251200.2	Wheat	nucleus	43.92	42.47
TraesCS6B01G274100.2	Wheat	nucleus	43.8	42.35
Zm00001d036507_P003	Maize	cytosol	41.68	40.53
GSMUA_Achr4P26960_001	Banana	nucleus	23.73	39.72
Solyc01g006040.2.1	Tomato	nucleus	18.54	28.29

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006464	GO:GO:0006513
GO:GO:0006950	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009791	GO:GO:0009817	GO:GO:0009965	GO:GO:0009987
GO:GO:0010162	GO:GO:0010228	GO:GO:0010389	GO:GO:0010390	GO:GO:0016043	GO:GO:0016049
GO:GO:0016740	GO:GO:0019538	GO:GO:0033523	GO:GO:0040007	GO:GO:0042803	GO:GO:0045087
GO:GO:0051301	GO:GO:0051781	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4D6E1	PFAM:PF13920
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc11g013370.1	EnsemblPlants:Solyc11g013370.1.1	UniParc:UPI000276A43A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase BRE1-like 1 [Source:Projected from Arabidopsis thaliana (AT2G44950) UniProtKB/Swiss-Prot;Acc:Q8RXD6]

Coordinates

chr11:-:6351744..6371862

Molecular Weight (calculated)

97418.8 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.698

Length

847 amino acids

Sequence
(BLAST)

001: MENLLPLDTA VLLHQNQKLS QKLEAQKIEI AVLEEKFTEL RDKQKPYDNT LSAIQKSWEE LVGELEICST RTEDPIRHGN ASNDQSCAED GSVYACDDSF
101: LSLLLQTGAT GSSSDVNTQT EYEQKKMDDQ KIVKIFRNIV STVDNVRQMK DKLCAAVLEV LPEDGSCLQK SLSDLHVGVK NLIQTINELH LKHRSLAGAL
201: QNHRDTDAKN KAELKCLRGE LEKTIAHLDE SNRKLAILKA EKDAAKGVLF PVLNLGNKHS ANDKARDKQR DMQDMESTLK EYLDQSSFRL FELKRLHEER
301: IDILKQLSNL QNKLKNLKAI CSSQPYILVK DQLAKAKEDL SLYQSLYEKL QVEKDNLSWR EKEMNLKNDI TDVFRRSSTI ADSRIAWLEK EMQKHMQERN
401: MIEGKLEEAS REPGRKEIIA EFKKLVSSFP ETMGDMQNQL SNYKETASDV HSLRTDVQSL SSILDRKSKE IEALSAKSAS QVTEMLKLQA VVNDLKESDM
501: HLKLILEMYT RESAFSRDVF EARSSEYRAW ARVQSLKTSL DEHNLEVRVK SAIEAEADSQ QKLGAAEAEI AELRQKLDAS KRERSRLSEV LKSKHEETEA
601: YLSEIETIGQ AYDDMQAQNQ QLFQQITERD DYNIKLVLEG VRARQQRDCL AWESQITERA VEDANTMVSS YEMKAAKIDD QLRGCSDLIQ KLAEDRGQNS
701: LALENTQKRF LDVRKSSQQL RETLEEWQSK IDEVRVDLAQ LQIELEKERF ERKRAEEDVE ALRRKTSRLR SHIEGSSVIE KLQQKLREYK EILNCSICFD
801: RRKEVVLAKC YHLFCNPCIQ KIVETRHRKC PVCSASFGAN DVKAVYI

Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)

001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI

Arabidopsis Description

HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.