Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g061020.2.1 | |
| Solyc08g007120.2.1 | |
| Solyc08g077460.2.1 | |
| Solyc11g008390.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041764 | Potato | cytosol | 73.98 | 93.81 |
| VIT_00s1522g00010.t01 | Wine grape | cytosol, nucleus, plastid | 48.78 | 61.86 |
| Bra024392.1-P | Field mustard | nucleus | 40.65 | 54.35 |
| CDY67216 | Canola | nucleus | 40.65 | 54.35 |
| CDY14574 | Canola | nucleus | 41.46 | 53.68 |
| AT5G65495.1 | Thale cress | nucleus | 39.84 | 52.13 |
Protein Annotations
| EnsemblPlants:Solyc11g010680.2.1 | EnsemblPlantsGene:Solyc11g010680.2 | ncoils:Coil | ProteinID:AAK84472.1 | SEG:seg | UniParc:UPI00000A93C7 |
| UniProt:Q949K5 | MapMan:35.2 | : | : | : | : |
Description
Protein SKIP34 [Source:Projected from Arabidopsis thaliana (AT5G65495) UniProtKB/Swiss-Prot;Acc:Q8GWU7]
Coordinates
chr11:+:3721153..3724626
Molecular Weight (calculated)
14342.2 Da
IEP (calculated)
8.726
GRAVY (calculated)
-0.794
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYGGQRLPS KDDLTDPTRR TRTLPAANEN AVVVENLRDR LAETEARLER ARAREAELSR QLEEMKRYVC VMEILECYLK RRYREQQVRT LAVLTHTFTD
101: PPDGLSKYTS RQVAKDINCK GYC
101: PPDGLSKYTS RQVAKDINCK GYC
1: MCYGHNQSLS SRSSLRRRSH DGEDDSVVDD LRDRLAETEA RLRRARAREA ELSRRLEHMK RFVSVMEIIE TFLERRFQEQ KDRIARLFSP VSTK
Arabidopsis Description
SKIP34Protein SKIP34 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWU7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.