Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14574 | Canola | nucleus | 85.11 | 84.21 |
| Bra024392.1-P | Field mustard | nucleus | 79.79 | 81.52 |
| CDY67216 | Canola | nucleus | 79.79 | 81.52 |
| VIT_00s1522g00010.t01 | Wine grape | cytosol, nucleus, plastid | 59.57 | 57.73 |
| PGSC0003DMT400041764 | Potato | cytosol | 51.06 | 49.48 |
| Solyc11g010680.2.1 | Tomato | cytosol | 52.13 | 39.84 |
Protein Annotations
| ArrayExpress:AT5G65495 | EMBL:AB026638 | EMBL:AK118625 | EMBL:BT004684 | EnsemblPlants:AT5G65495.1 | EnsemblPlantsGene:AT5G65495 |
| EntrezGene:836675 | GO:GO:0008150 | ncoils:Coil | PO:PO:0000293 | ProteinID:AED98063.1 | ProteinID:OAO91358.1 |
| RefSeq:AT5G65495 | RefSeq:AT5G65495-TAIR-G | RefSeq:NP_850928.1 | SEG:seg | TAIR:AT5G65495 | TAIR:AT5G65495.1 |
| Unigene:At.43119 | UniParc:UPI000000C427 | UniProt:A0A178UBY1 | UniProt:Q8GWU7 | MapMan:35.2 | : |
Description
SKIP34Protein SKIP34 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWU7]
Coordinates
chr5:+:26180421..26181069
Molecular Weight (calculated)
11222.3 Da
IEP (calculated)
10.551
GRAVY (calculated)
-0.973
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MCYGHNQSLS SRSSLRRRSH DGEDDSVVDD LRDRLAETEA RLRRARAREA ELSRRLEHMK RFVSVMEIIE TFLERRFQEQ KDRIARLFSP VSTK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.