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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • golgi 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003735.1-P
Bra007105.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra012650.1-P
Bra015801.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65495.1 Bra012213.1-P AT1G20140.1 21798944
AT5G65495.1 Bra012214.1-P AT1G20140.1 21798944
AT5G65495.1 Bra012216.1-P AT1G20140.1 21798944
AT5G65495.1 Bra025795.1-P AT1G20140.1 21798944
AT5G65495.1 Bra003735.1-P AT1G75950.1 12795696
AT5G65495.1 Bra008231.1-P AT1G75950.1 12795696
AT5G65495.1 Bra015801.1-P AT1G75950.1 12795696
AT5G65495.1 Bra007105.1-P AT3G54850.1 21798944
AT5G65495.1 Bra012650.1-P AT4G17680.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67216 Canola nucleus 100.0 100.0
AT5G65495.1 Thale cress nucleus 81.52 79.79
VIT_00s1522g00010.t01 Wine grape cytosol, nucleus, plastid 57.61 54.64
PGSC0003DMT400041764 Potato cytosol 54.35 51.55
Solyc11g010680.2.1 Tomato cytosol 54.35 40.65
Protein Annotations
EnsemblPlants:Bra024392.1EnsemblPlants:Bra024392.1-PEnsemblPlantsGene:Bra024392ncoils:CoilSEG:segUniParc:UPI000253F568
UniProt:M4E6I8MapMan:35.2::::
Description
AT5G65495 (E=8e-016) | unknown protein
Coordinates
chrA06:+:15465533..15465811
Molecular Weight (calculated)
11122.2 Da
IEP (calculated)
9.361
GRAVY (calculated)
-1.063
Length
92 amino acids
Sequence
(BLAST)
1: MCYGHNQSFS RNTLRSRSHD GENEDSLVVD DLRDRLAETE ARLRRARARE AELSRRLEQM KRFVSVMEIM EAFLERRFQE QKDRIDRLFS TK
Best Arabidopsis Sequence Match ( AT5G65495.1 )
(BLAST)
1: MCYGHNQSLS SRSSLRRRSH DGEDDSVVDD LRDRLAETEA RLRRARAREA ELSRRLEHMK RFVSVMEIIE TFLERRFQEQ KDRIARLFSP VSTK
Arabidopsis Description
SKIP34Protein SKIP34 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWU7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.