Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g006030.2.1 | |
| Solyc01g006040.2.1 | |
| Solyc11g013370.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G14400.1 | Solyc01g006030.2.1 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | Solyc01g006040.2.1 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | Solyc11g013370.1.1 | AT2G44950.1 | 18849490 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g070980.2.1 | Tomato | mitochondrion, nucleus | 98.68 | 98.68 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 96.71 | 96.71 |
| Bra024808.1-P | Field mustard | mitochondrion, nucleus | 96.71 | 96.71 |
| Bra026222.1-P | Field mustard | mitochondrion, nucleus | 96.71 | 96.71 |
| Bra026582.1-P | Field mustard | mitochondrion, nucleus | 96.71 | 96.71 |
| Bra017410.1-P | Field mustard | mitochondrion, nucleus | 96.05 | 96.05 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 96.05 | 96.05 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 95.39 | 95.39 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 95.39 | 95.39 |
| Bra026833.1-P | Field mustard | mitochondrion, nucleus | 95.39 | 95.39 |
| CDY39315 | Canola | mitochondrion | 95.39 | 95.39 |
| Solyc02g067420.2.1 | Tomato | nucleus | 94.74 | 94.74 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 95.39 | 89.51 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 95.39 | 89.51 |
| Bra016704.1-P | Field mustard | nucleus | 85.53 | 85.53 |
| KRG99148 | Soybean | mitochondrion | 71.71 | 83.21 |
| CDX84034 | Canola | nucleus | 57.89 | 82.24 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 100.0 | 76.0 |
| Bra016703.1-P | Field mustard | nucleus | 95.39 | 69.05 |
| CDX96859 | Canola | mitochondrion | 84.21 | 67.72 |
| HORVU3Hr1G020470.1 | Barley | plastid | 95.39 | 63.88 |
| Solyc08g081950.2.1 | Tomato | cytosol | 36.18 | 46.22 |
| Solyc05g050230.2.1 | Tomato | cytosol | 43.42 | 44.59 |
| Solyc07g066080.2.1 | Tomato | cytosol | 43.42 | 44.59 |
| Solyc02g083570.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc03g007470.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc12g056100.1.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc10g011740.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc08g008220.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc06g082600.2.1 | Tomato | extracellular | 42.11 | 43.24 |
| Solyc06g007510.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc01g095490.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 40.79 | 41.89 |
| Solyc10g007260.2.1 | Tomato | plastid | 37.5 | 37.25 |
| Solyc07g062570.2.1 | Tomato | plastid | 37.5 | 37.25 |
| Solyc01g005840.2.1 | Tomato | plastid | 30.92 | 25.97 |
Protein Annotations
| MapMan:19.2.2.1.4 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016574 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:K4BBT1 | EMBL:KY246933 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR43898 | PANTHER:PTHR43898:SF8 | SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:Solyc02g087750.2 | EnsemblPlants:Solyc02g087750.2.1 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0002768120 | : | : |
Description
UBC41 [Source:UniProtKB/TrEMBL;Acc:K4BBT1]
Coordinates
chr2:+:50057100..50062209
Molecular Weight (calculated)
17342.5 Da
IEP (calculated)
5.196
GRAVY (calculated)
-0.559
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPARKRLM RDFKRLQQDP PAGISGAPYD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRK VREIVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRK VREIVEQSWT AD
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
Arabidopsis Description
UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.