Factsheet for Solyc03g007470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023419	Potato	cytosol	100.0	100.0
KRH64511	Soybean	cytosol	99.32	99.32
KRH53428	Soybean	cytosol	99.32	99.32
KRH15985	Soybean	cytosol	98.65	98.65
KRH18135	Soybean	cytosol	98.65	97.99
Solyc10g011740.2.1	Tomato	cytosol	97.97	97.97
GSMUA_Achr10P...	Banana	cytosol	97.97	97.97
Solyc12g056100.1.1	Tomato	cytosol	97.3	97.3
Solyc01g095490.2.1	Tomato	cytosol	97.3	97.3
Solyc08g081950.2.1	Tomato	cytosol	77.7	96.64
CDY34409	Canola	cytosol	96.62	96.62
CDY25571	Canola	cytosol	96.62	96.62
Solyc06g082600.2.1	Tomato	extracellular	96.62	96.62
Solyc06g007510.2.1	Tomato	cytosol	96.62	96.62
GSMUA_Achr4P02490_001	Banana	cytosol	95.95	95.95
Solyc08g008220.2.1	Tomato	cytosol	95.95	95.95
Solyc05g050230.2.1	Tomato	cytosol	95.95	95.95
AT5G41700.4	Thale cress	cytosol, mitochondrion, peroxisome	95.27	94.63
Solyc07g066080.2.1	Tomato	cytosol	91.89	91.89
Solyc02g083570.2.1	Tomato	cytosol	88.51	88.51
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	86.49	86.49
Bra027749.1-P	Field mustard	nucleus	86.49	84.21
CDY08368	Canola	cytosol	85.81	79.87
AT1G64230.5	Thale cress	cytosol	95.95	74.74
CDY38184	Canola	cytosol	87.16	71.67
Solyc10g007260.2.1	Tomato	plastid	48.65	47.06
Solyc07g062570.2.1	Tomato	plastid	47.97	46.41
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	43.92	42.76
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	43.92	42.76
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	43.24	42.11
Solyc02g067420.2.1	Tomato	nucleus	43.24	42.11
Solyc01g005840.2.1	Tomato	plastid	49.32	40.33

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BEH0	EMBL:KY246922
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212
SUPFAM:SSF54495	EnsemblPlantsGene:Solyc03g007470.2	EnsemblPlants:Solyc03g007470.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000276814B	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 28 [Source:Projected from Arabidopsis thaliana (AT1G64230) UniProtKB/Swiss-Prot;Acc:Q94F47]

Coordinates

chr3:-:2043582..2047562

Molecular Weight (calculated)

16578.0 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.349

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT4G27960.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG

Arabidopsis Description

UBC9Ubiquitin conjugating enzyme 9 [Source:UniProtKB/TrEMBL;Acc:F4JKF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.