Factsheet for Solyc07g066080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057302	Potato	cytosol	97.97	97.97
Bra027688.1-P	Field mustard	cytosol	69.59	92.79
Solyc03g007470.2.1	Tomato	cytosol	91.89	91.89
Solyc10g011740.2.1	Tomato	cytosol	91.89	91.89
Solyc06g007510.2.1	Tomato	cytosol	91.22	91.22
Solyc05g050230.2.1	Tomato	cytosol	91.22	91.22
Solyc06g082600.2.1	Tomato	extracellular	91.22	91.22
Solyc01g095490.2.1	Tomato	cytosol	91.22	91.22
KRH33057	Soybean	cytosol, nucleus, peroxisome	91.22	91.22
Solyc08g081950.2.1	Tomato	cytosol	72.97	90.76
HORVU2Hr1G118240.5	Barley	cytosol	78.38	90.62
Solyc12g056100.1.1	Tomato	cytosol	90.54	90.54
Solyc08g008220.2.1	Tomato	cytosol	89.86	89.86
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	89.86	89.86
GSMUA_Achr6P36250_001	Banana	nucleus	89.19	89.19
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	85.81	85.81
TraesCS4D01G067200.1	Wheat	plastid	64.19	84.82
Solyc02g083570.2.1	Tomato	cytosol	84.46	84.46
TraesCS3A01G487000.1	Wheat	cytosol	58.11	81.9
TraesCS4A01G244100.1	Wheat	peroxisome	67.57	76.92
TraesCS4A01G246700.1	Wheat	peroxisome	66.89	76.15
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	68.24	74.81
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	70.95	73.43
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	88.51	62.38
Solyc07g062570.2.1	Tomato	plastid	47.3	45.75
Solyc10g007260.2.1	Tomato	plastid	47.3	45.75
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	44.59	43.42
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	44.59	43.42
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	43.92	42.76
Solyc02g067420.2.1	Tomato	nucleus	43.92	42.76
Solyc01g005840.2.1	Tomato	plastid	49.32	40.33

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4CHT4	EMBL:KY246906
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	SMART:SM00212
SUPFAM:SSF54495	EnsemblPlantsGene:Solyc07g066080.2	EnsemblPlants:Solyc07g066080.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000276B278	:	:	:	:	:

Description

UBC12 [Source:UniProtKB/TrEMBL;Acc:K4CHT4]

Coordinates

chr7:+:67606579..67608500

Molecular Weight (calculated)

16436.7 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.382

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIQKEL KDLQKDPPAS CSAGPVGQDM FHWQATIMGP SDSPFSGGVF LASIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RPKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.