Factsheet for Bra027688.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G118240.5	Barley	cytosol	93.69	81.25
TraesCS4D01G067200.1	Wheat	plastid	79.28	78.57
TraesCS3A01G487000.1	Wheat	cytosol	71.17	75.24
Bra003066.1-P	Field mustard	cytosol	96.4	72.3
Bra029076.1-P	Field mustard	cytosol	95.5	71.62
Bra022645.1-P	Field mustard	cytosol	95.5	71.62
TraesCS4A01G246700.1	Wheat	peroxisome	83.78	71.54
TraesCS4A01G244100.1	Wheat	peroxisome	83.78	71.54
PGSC0003DMT400057302	Potato	cytosol	94.59	70.95
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	94.59	70.95
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	85.59	70.37
KRH33057	Soybean	cytosol, nucleus, peroxisome	92.79	69.59
Solyc07g066080.2.1	Tomato	cytosol	92.79	69.59
Bra035605.1-P	Field mustard	cytosol	91.89	68.92
Bra041101.1-P	Field mustard	cytosol	90.99	68.24
Bra001347.1-P	Field mustard	cytosol	90.99	68.24
GSMUA_Achr6P36250_001	Banana	nucleus	90.09	67.57
Bra002842.1-P	Field mustard	cytosol	90.09	67.57
Bra028946.1-P	Field mustard	cytosol	84.68	67.14
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	83.78	65.03
Bra027749.1-P	Field mustard	nucleus	88.29	64.47
Bra013049.1-P	Field mustard	cytosol	82.88	62.16
Bra001995.1-P	Field mustard	cytosol	81.08	50.0
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	90.09	47.62
Bra032244.1-P	Field mustard	cytosol	55.86	41.33
Bra008383.1-P	Field mustard	cytosol	54.95	39.87
Bra026700.1-P	Field mustard	cytosol	54.95	39.87
Bra026018.1-P	Field mustard	cytosol	54.05	39.22
Bra016626.1-P	Field mustard	cytosol	54.05	39.22
Bra035071.1-P	Field mustard	cytosol	48.65	38.85
Bra026222.1-P	Field mustard	mitochondrion, nucleus	45.95	33.55
Bra017410.1-P	Field mustard	mitochondrion, nucleus	45.95	33.55
Bra026833.1-P	Field mustard	mitochondrion, nucleus	45.95	33.55
Bra029252.1-P	Field mustard	mitochondrion, nucleus	45.05	33.33
Bra026582.1-P	Field mustard	mitochondrion, nucleus	45.05	32.89
Bra024808.1-P	Field mustard	mitochondrion, nucleus	45.05	32.89
Bra016264.1-P	Field mustard	mitochondrion	45.05	32.89
Bra029711.1-P	Field mustard	nucleus	88.29	31.61
Bra016704.1-P	Field mustard	nucleus	43.24	31.58
Bra027422.1-P	Field mustard	plastid	47.75	28.96
Bra016703.1-P	Field mustard	nucleus	45.95	24.29

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra027688	EnsemblPlants:Bra027688.1	EnsemblPlants:Bra027688.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4EFX5	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF78	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002542383	:	:	:	:	:

Description

AT1G64230 (E=2e-063) UBC28 | ubiquitin-conjugating enzyme, putative

Coordinates

chrA09:-:6939253..6939737

Molecular Weight (calculated)

12384.9 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.261

Length

111 amino acids

Sequence
(BLAST)

001: MGPSDSPYSG GVFLVTIHFP PDYPFKPPKV AFRTKVFHPN VNSNGSICLD ILKEQWSPAL TISKVLLSIC SLLTDPNPDD PLVPEIAHMY KTDRAKYEST
101: ARSWTQKYAM G

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.