Factsheet for Bra016704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026833.1-P	Field mustard	mitochondrion, nucleus	88.82	88.82
Bra026222.1-P	Field mustard	mitochondrion, nucleus	88.16	88.16
Bra026582.1-P	Field mustard	mitochondrion, nucleus	87.5	87.5
Bra024808.1-P	Field mustard	mitochondrion, nucleus	87.5	87.5
Bra017410.1-P	Field mustard	mitochondrion, nucleus	86.84	86.84
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	85.53	85.53
TraesCS3B01G131500.2	Wheat	nucleus	84.21	84.21
Bra016264.1-P	Field mustard	mitochondrion	84.21	84.21
Solyc02g067420.2.1	Tomato	nucleus	81.58	81.58
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	79.61	79.61
TraesCS3D01G114600.3	Wheat	mitochondrion	84.21	79.01
TraesCS3A01G112600.1	Wheat	mitochondrion	84.21	79.01
Bra029252.1-P	Field mustard	mitochondrion, nucleus	77.63	78.67
CDX96859	Canola	mitochondrion	96.05	77.25
KRG99148	Soybean	mitochondrion	62.5	72.52
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	85.53	65.0
Bra016703.1-P	Field mustard	nucleus	88.82	64.29
HORVU3Hr1G020470.1	Barley	plastid	84.21	56.39
Bra027688.1-P	Field mustard	cytosol	31.58	43.24
Bra041101.1-P	Field mustard	cytosol	40.79	41.89
Bra001347.1-P	Field mustard	cytosol	40.79	41.89
Bra029076.1-P	Field mustard	cytosol	40.13	41.22
Bra003066.1-P	Field mustard	cytosol	40.13	41.22
Bra022645.1-P	Field mustard	cytosol	40.13	41.22
Bra035605.1-P	Field mustard	cytosol	38.82	39.86
Bra028946.1-P	Field mustard	cytosol	36.18	39.29
Bra002842.1-P	Field mustard	cytosol	36.84	37.84
Bra027749.1-P	Field mustard	nucleus	37.5	37.5
Bra013049.1-P	Field mustard	cytosol	36.18	37.16
Bra026700.1-P	Field mustard	cytosol	35.53	35.29
Bra026018.1-P	Field mustard	cytosol	35.53	35.29
Bra016626.1-P	Field mustard	cytosol	34.87	34.64
Bra008383.1-P	Field mustard	cytosol	34.87	34.64
Bra035071.1-P	Field mustard	cytosol	30.26	33.09
Bra032244.1-P	Field mustard	cytosol	31.58	32.0
Bra001995.1-P	Field mustard	cytosol	36.84	31.11
Bra027422.1-P	Field mustard	plastid	30.26	25.14
Bra029711.1-P	Field mustard	nucleus	40.79	20.0

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra016704	EnsemblPlants:Bra016704.1	EnsemblPlants:Bra016704.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DJM6	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898
PANTHER:PTHR43898:SF5	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002545C76	:	:	:	:	:

Description

AT1G14400 (E=1e-078) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase

Coordinates

chrA08:+:19617700..19618516

Molecular Weight (calculated)

17420.6 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.531

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKMLEQDP PAGINGSPQD NSIMLWNAVI FGPDDSPWDG GTFKLSLQFS EDYPNKPPRV RFVSRMFHPN IYLDGRICLD ILQNQWTPVY
101: DCAAILISIQ SLLCDPNTNS SANSEAALMY SENKREYNRR VRDVVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.1 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.