Factsheet for Bra001995.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001717.1-P
Bra002208.1-P
Bra004436.1-P
Bra022347.1-P
Bra037568.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	Bra004436.1-P	AT2G47700.1	21798944
AT2G16740.1	Bra001717.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra022347.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra037568.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra002208.1-P	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31408	Canola	cytosol	80.56	97.97
CDX71304	Canola	cytosol, mitochondrion, nucleus	80.0	97.3
AT2G16740.1	Thale cress	cytosol	73.33	89.19
Bra013049.1-P	Field mustard	cytosol	70.56	85.81
KRH24311	Soybean	cytosol	69.44	84.46
KRH29288	Soybean	cytosol	69.44	84.46
VIT_03s0038g02390.t01	Wine grape	cytosol	68.33	83.11
PGSC0003DMT400009229	Potato	nucleus	68.33	83.11
Os02t0120600-01	Rice	cytosol	68.33	83.11
Solyc02g083570.2.1	Tomato	cytosol	67.78	82.43
Bra029076.1-P	Field mustard	cytosol	67.22	81.76
Bra003066.1-P	Field mustard	cytosol	67.22	81.76
Bra022645.1-P	Field mustard	cytosol	67.22	81.76
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	66.67	81.08
Bra027688.1-P	Field mustard	cytosol	50.0	81.08
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	66.67	81.08
TraesCS6A01G071100.1	Wheat	cytosol	66.67	80.54
TraesCS6B01G095200.1	Wheat	cytosol	66.67	80.54
TraesCS6D01G069000.1	Wheat	cytosol	66.67	80.54
KXG29317	Sorghum	nucleus	66.11	80.41
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	66.11	80.41
Bra001347.1-P	Field mustard	cytosol	65.56	79.73
Zm00001d053897_P001	Maize	mitochondrion	65.56	79.73
Bra041101.1-P	Field mustard	cytosol	65.56	79.73
Bra028946.1-P	Field mustard	cytosol	61.67	79.29
GSMUA_Achr7P17820_001	Banana	cytosol	65.0	79.05
Bra035605.1-P	Field mustard	cytosol	65.0	79.05
Bra002842.1-P	Field mustard	cytosol	63.89	77.7
Bra027749.1-P	Field mustard	nucleus	58.33	69.08
Bra032244.1-P	Field mustard	cytosol	40.0	48.0
Bra026700.1-P	Field mustard	cytosol	38.89	45.75
Bra026018.1-P	Field mustard	cytosol	38.89	45.75
Bra016626.1-P	Field mustard	cytosol	38.33	45.1
Bra008383.1-P	Field mustard	cytosol	38.33	45.1
Bra035071.1-P	Field mustard	cytosol	33.89	43.88
Bra029252.1-P	Field mustard	mitochondrion, nucleus	33.89	40.67
Bra016264.1-P	Field mustard	mitochondrion	33.89	40.13
Bra026833.1-P	Field mustard	mitochondrion, nucleus	33.33	39.47
Bra026582.1-P	Field mustard	mitochondrion, nucleus	33.33	39.47
Bra026222.1-P	Field mustard	mitochondrion, nucleus	33.33	39.47
Bra024808.1-P	Field mustard	mitochondrion, nucleus	33.33	39.47
Bra017410.1-P	Field mustard	mitochondrion, nucleus	32.78	38.82
Bra029711.1-P	Field mustard	nucleus	66.67	38.71
Bra027422.1-P	Field mustard	plastid	38.33	37.7
Bra016704.1-P	Field mustard	nucleus	31.11	36.84
Bra016703.1-P	Field mustard	nucleus	33.33	28.57

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra001995	EnsemblPlants:Bra001995.1	EnsemblPlants:Bra001995.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4CCR4	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF47	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00025442DB	SEG:seg	:	:	:	:

Description

AT2G16740 (E=8e-067) UBC29 | UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligase

Coordinates

chrA10:-:12403497..12405605

Molecular Weight (calculated)

20170.7 Da

IEP (calculated)

4.717

GRAVY (calculated)

-0.463

Length

180 amino acids

Sequence
(BLAST)

001: MATRRILKEL RELQRDPPMS CSAGPVGEDM FHWQATIMGP NESPYTGGVF LVTINFSQDY PFKPPKVVFK TKVFHPNINS NGNICLDILK DQWSPALTIS
101: KVLLSVCSLL TDPNPDDPLV PEIAHICKTD KAKYEAMARS WTQNYYYKRI HGAVTGEEYV SDYDGDDSLS TSESSEDEGS

Best Arabidopsis Sequence Match ( AT2G16740.1 )
(BLAST)

001: MATRRILKEL KELQRDPPVS CSAGPTGEDM FHWQATIMGP NESPYSGGVF LVNIHFPPDY PFKPPKVVFR TKVFHPNINS NGNICLDILK DQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD KTKYEAMARS WTQKYALF

Arabidopsis Description

UBC29UBC29 [Source:UniProtKB/TrEMBL;Acc:A0A178VQZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.