Factsheet for Bra002208.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013917.1-P
Bra019142.1-P
Bra020704.1-P
Bra036176.1-P
Bra037488.1-P
Bra037489.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	Bra013917.1-P	AT4G25760.1	22291198
AT5G19080.1	Bra019142.1-P	AT4G25760.1	22291198
AT5G19080.1	Bra020704.1-P	AT5G48385.1	21798944
AT5G19080.1	Bra036176.1-P	AT5G48385.1	21798944
AT5G19080.1	Bra037488.1-P	AT5G48385.1	21798944
AT5G19080.1	Bra037489.1-P	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92559	Canola	mitochondrion	97.33	97.85
AT5G19080.1	Thale cress	cytosol	66.58	65.87
Bra020773.1-P	Field mustard	mitochondrion	58.29	60.06
TraesCS1B01G258900.1	Wheat	cytosol	33.42	54.82
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	29.95	54.37
Zm00001d038127_P001	Maize	nucleus	45.72	50.89
KRH51029	Soybean	mitochondrion	45.72	50.89
EES19487	Sorghum	nucleus	45.99	50.59
KRH20904	Soybean	mitochondrion	49.73	50.13
KRH11381	Soybean	mitochondrion	49.73	49.87
GSMUA_Achr3P09070_001	Banana	cytosol	35.56	48.36
KRH02118	Soybean	cytosol, mitochondrion	35.03	47.46
Os05t0397650-00	Rice	nucleus	44.65	47.04
Solyc01g080080.2.1	Tomato	nucleus	19.52	46.79
VIT_05s0020g02680.t01	Wine grape	mitochondrion	48.66	46.43
PGSC0003DMT400073576	Potato	plastid	46.79	45.45
Bra003133.1-P	Field mustard	nucleus	34.22	44.29
Bra009546.1-P	Field mustard	cytosol	32.09	40.4
Bra029788.1-P	Field mustard	nucleus, plastid	39.04	38.32
Bra034086.1-P	Field mustard	nucleus, plastid	37.7	38.01
Bra028846.1-P	Field mustard	cytosol	25.67	36.09

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra002208	EnsemblPlants:Bra002208.1	EnsemblPlants:Bra002208.1-P	InterPro:E3ligase_BOI_like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083
UniProt:M4CDC7	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002545357	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G19080 (E=2e-123) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:-:10901128..10902784

Molecular Weight (calculated)

42542.9 Da

IEP (calculated)

5.782

GRAVY (calculated)

-0.664

Length

374 amino acids

Sequence
(BLAST)

001: MGISFSNRRR NNHHRRYHHH LPPPPPYYYS DQPQQPPPQP PHNEYSYTHN HLVSAPQHSL PPPSQPHPPP QVNYGSYGYN YNQIQNPQQQ QPPYFSGYHP
101: NGWNTMMRPV YYGPAVVVDQ QPPQPYVEHQ SAKKVRNDVN VHKDTVRLEA DDLNPGYHLV SFLFDAVFDG SFTIMFFAKE EENCTMVPQF PEAFKPIQVP
201: FQKGTAQKFV QSSGTGTDLG FFSLDDLSNP LPDEVFPLVI SAETVISGSE EPLVHKQITL ACLEKTDDGS FKVKVMKQIL WIEGARYELR ELYGIDNSTA
301: QDDDVASGLE DSGDKECVIC LTEPKDTAVM PCRHLCLCSD CAKELRFQSN KCPICRQPID ELLMIKVETS NEQH

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.