CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH07289
KRH11911
KRH18976
KRH36952
KRH66280
KRH66282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	KRH11911	AT3G12470.1	21798944
AT5G19080.1	KRH36952	AT3G12470.1	21798944
AT5G19080.1	KRH02920	AT4G25760.1	22291198
AT5G19080.1	KRH18976	AT4G25760.1	22291198
AT5G19080.1	KRH07289	AT5G48385.1	21798944
AT5G19080.1	KRH66280	AT5G48385.1	21798944
AT5G19080.1	KRH66282	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20904	Soybean	mitochondrion	84.72	85.18
KRH51029	Soybean	mitochondrion	61.39	68.15
KRH02118	Soybean	cytosol, mitochondrion	46.92	63.41
CDY13950	Canola	cytosol	16.62	62.63
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	32.44	58.74
TraesCS1B01G258900.1	Wheat	cytosol	35.66	58.33
CDY13958	Canola	cytosol	30.03	58.33
Solyc01g080080.2.1	Tomato	nucleus	23.86	57.05
VIT_05s0020g02680.t01	Wine grape	mitochondrion	58.45	55.61
GSMUA_Achr3P09070_001	Banana	cytosol	39.14	53.09
AT3G06140.1	Thale cress	mitochondrion	50.4	52.37
PGSC0003DMT400073576	Potato	plastid	52.81	51.17
CDY05235	Canola	mitochondrion	49.6	50.68
CDX92559	Canola	mitochondrion	49.87	50.0
CDY24715	Canola	mitochondrion	48.53	49.86
Bra020773.1-P	Field mustard	mitochondrion	48.53	49.86
Bra002208.1-P	Field mustard	mitochondrion, nucleus	49.87	49.73
EES19487	Sorghum	nucleus	45.31	49.71
AT5G19080.1	Thale cress	cytosol	48.79	48.15
Os05t0397650-00	Rice	nucleus	45.58	47.89
CDY13949	Canola	mitochondrion	49.06	47.41
Zm00001d038127_P001	Maize	nucleus	42.63	47.32
KRH19856	Soybean	nucleus	43.7	46.7
KRH32464	Soybean	plastid	43.16	46.13
KRH22903	Soybean	mitochondrion, nucleus	34.85	42.07
KRH67682	Soybean	nucleus	37.53	41.06
KRG95976	Soybean	plastid	39.95	40.71
KRH05126	Soybean	cytosol	8.31	31.96

Protein Annotations

EMBL:ACUP02009206	EnsemblPlants:KRH11381	EnsemblPlantsGene:GLYMA_15G104300	EntrezGene:100786054	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH11381	ProteinID:KRH11381.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233B2E5	UniProt:I1MFE5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:8155486..8159701

Molecular Weight (calculated)

41670.0 Da

IEP (calculated)

5.733

GRAVY (calculated)

-0.641

Length

373 amino acids

Sequence
(BLAST)

001: MGISWSGNSR RRNNYLQNRP PPPSYYYPPE SHPPPPPPPP PPPQSQGYFL PSTTPYAPPP PLPPPPGPPQ SHSISFYYNS NPNSYGTPTL APRFHYQHYY
101: QPHPSACPAP RPASTTPPPY VDHQTAKKIR NYVNVHKDTL RLEVDDHNPD HHLLSFVFDA VYDGSITILY FAKEEEKCRF VPLYPDAFQP VRIPFQKGVG
201: QKFAQPSGTG IDLGFFELDD LSKPSPGEDV FPLVICAETS LKTTSEDETP GDSLLDASPH MQITQGILEK SNGAGPFLIK VVKQILWIDG VRYELRELYG
301: IGNSSTDDFD DNDPGKECVI CMTEPKDTAV LPCRHMCMCS ECANALRQQS NKCPICRQPI EELIEIKVNN GDQ

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.