CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH05332
KRH15701
KRH18976
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	KRH02920	AT2G24762.1	22291198
AT3G09770.1	KRH18976	AT2G24762.1	22291198
AT3G09770.1	KRH02920	AT4G25760.1	22291198
AT3G09770.1	KRH18976	AT4G25760.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	22291198
AT3G09770.1	KRH18976	AT4G31730.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	24036454
AT3G09770.1	KRH18976	AT4G31730.1	24036454
AT3G53410.1	KRH52586	AT1G22920.1	21798944
AT3G53410.1	KRH61926	AT1G22920.1	21798944
AT3G53410.1	KRH02920	AT4G25760.1	22291198
AT3G53410.1	KRH18976	AT4G25760.1	22291198
AT3G53410.1	KRH02920	AT5G57685.1	22291198
AT3G53410.1	KRH18976	AT5G57685.1	22291198
AT5G03200.1	KRH02920	AT4G31730.1	22291198
AT5G03200.1	KRH18976	AT4G31730.1	22291198
AT5G03200.1	KRH05332	AT5G24920.1	22291198
AT5G03200.1	KRH15701	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95976	Soybean	plastid	86.51	80.6
KRH32464	Soybean	plastid	67.45	65.9
KRH19856	Soybean	nucleus	66.28	64.76
CDX70325	Canola	cytosol	18.18	60.19
PGSC0003DMT400027153	Potato	nucleus, plastid	55.72	59.94
Solyc10g084100.1.1	Tomato	nucleus, plastid	56.01	59.87
VIT_08s0040g01940.t01	Wine grape	cytosol	62.46	58.84
PGSC0003DMT400004461	Potato	plastid	61.88	58.13
CDY41587	Canola	cytosol	46.63	57.82
KRH05126	Soybean	cytosol	16.42	57.73
Solyc09g007700.2.1	Tomato	plastid	61.0	57.46
Zm00001d015671_P001	Maize	cytosol	36.07	54.67
GSMUA_Achr5P14690_001	Banana	cytosol	48.09	53.42
GSMUA_Achr11P...	Banana	cytosol	46.04	53.04
GSMUA_Achr7P01960_001	Banana	cytosol	47.51	52.94
PGSC0003DMT400045328	Potato	plastid	54.25	52.86
Solyc10g086080.1.1	Tomato	nucleus	51.91	52.84
Bra029788.1-P	Field mustard	nucleus, plastid	58.36	52.23
CDY22203	Canola	mitochondrion, plastid	56.6	51.88
AT3G53410.1	Thale cress	cytosol	45.45	51.84
CDY41312	Canola	plastid	56.3	51.61
Bra034086.1-P	Field mustard	nucleus, plastid	56.01	51.48
CDY44729	Canola	plastid	58.36	51.16
CDY44348	Canola	cytosol	39.3	50.95
AT3G09770.1	Thale cress	plastid	57.48	50.52
CDY67386	Canola	cytosol	42.52	50.17
Bra003133.1-P	Field mustard	nucleus	42.52	50.17
CDY10400	Canola	cytosol	43.4	49.66
Bra009546.1-P	Field mustard	cytosol	43.11	49.49
KRH22903	Soybean	mitochondrion, nucleus	44.57	49.19
CDY13299	Canola	cytosol	42.23	48.98
EER92535	Sorghum	nucleus	57.18	48.51
GSMUA_Achr2P12340_001	Banana	nucleus	56.6	48.37
Zm00001d028475_P002	Maize	cytosol	56.01	47.75
Bra028846.1-P	Field mustard	cytosol	37.24	47.74
CDY62899	Canola	cytosol	37.24	47.74
TraesCS4D01G221000.1	Wheat	cytosol	56.6	47.65
TraesCS4B01G220700.1	Wheat	cytosol	56.3	47.41
TraesCS4A01G083500.1	Wheat	cytosol	56.01	47.16
CDX70324	Canola	cytosol	22.58	45.83
TraesCS7B01G390000.1	Wheat	mitochondrion	36.66	45.29
AT5G03200.1	Thale cress	mitochondrion	44.57	45.1
Os10t0204100-01	Rice	nucleus	56.01	44.94
HORVU0Hr1G008700.4	Barley	cytosol	53.96	43.4
TraesCS7A01G486700.1	Wheat	cytosol	38.12	42.9
TraesCS7D01G473200.1	Wheat	cytosol	38.12	42.9
Os01t0374900-01	Rice	plastid	38.71	42.17
HORVU7Hr1G109550.2	Barley	cytosol	37.83	39.21
KRH20904	Soybean	mitochondrion	41.94	38.54
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.25	38.46
KRH51029	Soybean	mitochondrion	37.83	38.39
KRH11381	Soybean	mitochondrion	41.06	37.53
KRH02118	Soybean	cytosol, mitochondrion	29.62	36.59
Solyc04g054680.1.1	Tomato	cytosol	31.38	29.89
Solyc04g054650.1.1	Tomato	cytosol	34.31	24.07

Protein Annotations

EMBL:ACUP02002069	EnsemblPlants:KRH67682	EnsemblPlantsGene:GLYMA_03G180500	EntrezGene:100784713	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH67682	ProteinID:KRH67682.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233931D	UniProt:I1JPL8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:39241770..39245322

Molecular Weight (calculated)

38463.6 Da

IEP (calculated)

7.134

GRAVY (calculated)

-0.626

Length

341 amino acids

Sequence
(BLAST)

001: MGNISSGGNP RRRHSGASRR SHPPPPPPVT PQPEIAANPF VYHGAAAPYP NPPLHYPQYH YPGYYPPVPP MPYHPHQHQH HHRHMDPAWI QGHFPSGPMM
101: PNPAPFVEHQ KAVTIKNDVN IRKETLKLEP DVENSGHFLV SFSFDATVSG SITIYFFAKE GEGCILTPMK ENQLAPVSVH FEQGLGQKFR QAAGTGIDFS
201: VFEESELLER WVEKDVYPLA VKADASPGNH DESDRSPTSS NTNSQITQTM FEKEKGEFRV KVVKQILWVN GMRYELQEIY GIRNSTENDQ GKCVICLSEP
301: RDTIVLPCRH MCMCSGCAKD SRFQTDRCSI CRQPVERLLE I

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.