CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68780
CDX80475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03200.1	CDX68780	AT4G31730.1	22291198
AT5G03200.1	CDX80475	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028846.1-P	Field mustard	cytosol	100.0	100.0
CDY44348	Canola	cytosol	87.59	88.59
CDX70325	Canola	cytosol	24.06	62.14
CDY41587	Canola	cytosol	57.89	56.0
AT5G03200.1	Thale cress	mitochondrion	60.53	47.77
CDY10400	Canola	cytosol	53.38	47.65
CDY13950	Canola	cytosol	16.92	45.45
Zm00001d015671_P001	Maize	cytosol	37.97	44.89
GSMUA_Achr7P01960_001	Banana	cytosol	50.0	43.46
GSMUA_Achr5P14690_001	Banana	cytosol	50.0	43.32
CDX70324	Canola	cytosol	27.07	42.86
GSMUA_Achr11P...	Banana	cytosol	46.99	42.23
CDY41312	Canola	plastid	59.02	42.2
PGSC0003DMT400027153	Potato	nucleus, plastid	49.62	41.64
CDY67386	Canola	cytosol	45.11	41.52
CDY13299	Canola	cytosol	45.86	41.5
CDY22203	Canola	mitochondrion, plastid	57.89	41.4
Solyc10g086080.1.1	Tomato	nucleus	50.75	40.3
Solyc10g084100.1.1	Tomato	nucleus, plastid	48.12	40.13
PGSC0003DMT400045328	Potato	plastid	51.88	39.43
KRH05126	Soybean	cytosol	14.29	39.18
CDY44729	Canola	plastid	57.14	39.07
Solyc09g007700.2.1	Tomato	plastid	52.26	38.4
PGSC0003DMT400004461	Potato	plastid	52.26	38.29
VIT_08s0040g01940.t01	Wine grape	cytosol	51.5	37.85
KRH19856	Soybean	nucleus	49.25	37.54
KRH32464	Soybean	plastid	49.25	37.54
TraesCS7B01G390000.1	Wheat	mitochondrion	38.72	37.32
KRH67682	Soybean	nucleus	47.74	37.24
CDY13958	Canola	cytosol	26.69	36.98
KRG95976	Soybean	plastid	49.25	35.79
TraesCS7D01G473200.1	Wheat	cytosol	39.85	34.98
TraesCS7A01G486700.1	Wheat	cytosol	39.85	34.98
TraesCS4D01G221000.1	Wheat	cytosol	51.13	33.58
TraesCS4B01G220700.1	Wheat	cytosol	51.13	33.58
TraesCS4A01G083500.1	Wheat	cytosol	51.13	33.58
GSMUA_Achr2P12340_001	Banana	nucleus	50.0	33.33
EER92535	Sorghum	nucleus	50.0	33.08
Zm00001d028475_P002	Maize	cytosol	49.62	33.0
Os10t0204100-01	Rice	nucleus	52.63	32.94
Os01t0374900-01	Rice	plastid	38.35	32.59
HORVU7Hr1G109550.2	Barley	cytosol	39.47	31.91
HORVU0Hr1G008700.4	Barley	cytosol	50.75	31.84
Solyc04g054680.1.1	Tomato	cytosol	37.97	28.21
CDY24715	Canola	mitochondrion	37.59	27.55
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	49.62	27.44
CDY05235	Canola	mitochondrion	37.22	27.12
CDX92559	Canola	mitochondrion	36.84	26.34
CDY13949	Canola	mitochondrion	37.22	25.65
Solyc04g054650.1.1	Tomato	cytosol	39.47	21.6

Protein Annotations

EnsemblPlants:CDY62899	EnsemblPlantsGene:GSBRNA2T00037734001	Gene3D:3.30.40.10	GO:A0A078JB65	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY62899	ProteinID:CDY62899.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025436AF	UniProt:A0A078JB65
MapMan:35.1	:	:	:	:	:

Description

BnaAnng18440DBnaAnng18440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB65]

Coordinates

chrLK034214:+:25340..26492

Molecular Weight (calculated)

29823.9 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.348

Length

266 amino acids

Sequence
(BLAST)

001: MGNIFCCCCR IRDGGKKHKV PATTRTPYIE YQKPATIRNE VNLRKETLRL RPDPENPGQL LVSFSFDATV PARNRITLVF FAEEDSEFNL TATKGDTLPL
101: ITFDFEKEGL GHKYVQPSGT GVDLSLLEDS ELFKEDVGTC IYPLAVKMEA AAAPEEGKST NAQITQVTFV KEKGEVKIRV VKQLLWVNGA RYELQDIYGT
201: DQGKECVVCL SELRDTIVLP CRHMCMCSGC AKALRFQKNE CPVCRQPAER LMELEGNGYC DGDKHI

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.