Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03200.1 | CDX68780 | AT4G31730.1 | 22291198 |
| AT5G03200.1 | CDX80475 | AT5G24920.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62899 | Canola | cytosol | 88.59 | 87.59 |
| CDX70325 | Canola | cytosol | 24.71 | 63.11 |
| CDY41587 | Canola | cytosol | 57.41 | 54.91 |
| CDY10400 | Canola | cytosol | 56.27 | 49.66 |
| AT5G03200.1 | Thale cress | mitochondrion | 59.32 | 46.29 |
| CDY13950 | Canola | cytosol | 17.11 | 45.45 |
| Zm00001d015671_P001 | Maize | cytosol | 38.78 | 45.33 |
| CDX70324 | Canola | cytosol | 28.52 | 44.64 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 52.09 | 44.63 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 50.57 | 43.46 |
| CDY67386 | Canola | cytosol | 47.53 | 43.25 |
| GSMUA_Achr11P... | Banana | cytosol | 48.29 | 42.91 |
| CDY41312 | Canola | plastid | 59.7 | 42.2 |
| CDY13299 | Canola | cytosol | 46.77 | 41.84 |
| CDY22203 | Canola | mitochondrion, plastid | 58.94 | 41.67 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 49.43 | 41.01 |
| KRH19856 | Soybean | nucleus | 53.61 | 40.4 |
| CDY44729 | Canola | plastid | 59.7 | 40.36 |
| KRH32464 | Soybean | plastid | 53.23 | 40.11 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 47.91 | 39.5 |
| Solyc10g086080.1.1 | Tomato | nucleus | 50.19 | 39.4 |
| KRH67682 | Soybean | nucleus | 50.95 | 39.3 |
| PGSC0003DMT400045328 | Potato | plastid | 51.71 | 38.86 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 40.68 | 38.77 |
| PGSC0003DMT400004461 | Potato | plastid | 52.85 | 38.29 |
| Solyc09g007700.2.1 | Tomato | plastid | 52.47 | 38.12 |
| KRG95976 | Soybean | plastid | 52.09 | 37.43 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 51.33 | 37.29 |
| KRH05126 | Soybean | cytosol | 13.69 | 37.11 |
| CDY13958 | Canola | cytosol | 27.0 | 36.98 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 41.83 | 36.3 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 41.83 | 36.3 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 51.71 | 34.09 |
| Os01t0374900-01 | Rice | plastid | 40.3 | 33.87 |
| EER92535 | Sorghum | nucleus | 51.71 | 33.83 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 52.09 | 33.83 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 52.09 | 33.83 |
| Os10t0204100-01 | Rice | nucleus | 54.37 | 33.65 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 51.71 | 33.58 |
| Zm00001d028475_P002 | Maize | cytosol | 50.57 | 33.25 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 41.06 | 32.83 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 51.71 | 32.08 |
| CDY05235 | Canola | mitochondrion | 39.92 | 28.77 |
| CDY24715 | Canola | mitochondrion | 39.54 | 28.65 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 51.33 | 28.07 |
| CDX92559 | Canola | mitochondrion | 38.02 | 26.88 |
| Solyc04g054680.1.1 | Tomato | cytosol | 36.5 | 26.82 |
| CDY13949 | Canola | mitochondrion | 38.4 | 26.17 |
| Solyc04g054650.1.1 | Tomato | cytosol | 39.16 | 21.19 |
Protein Annotations
| EnsemblPlants:CDY44348 | EnsemblPlantsGene:GSBRNA2T00080006001 | Gene3D:3.30.40.10 | GO:A0A078I5B2 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDY44348 | ProteinID:CDY44348.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EAC996 | UniProt:A0A078I5B2 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC02g03290DBnaC02g03290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5B2]
Coordinates
chrLK032587:-:49286..50402
Molecular Weight (calculated)
29404.3 Da
IEP (calculated)
6.496
GRAVY (calculated)
-0.379
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNIFCCCCR IRDGGKKHKV PATTPPPYIE YQKPATIRNE VNLRKETLRL RPDPENPGQL LVSFSFDATV PGRITLVFFA EEDSQFNLTA TKGDTLPLIT
101: FDFEKGGLGH KYVQPSGTGV DLSLFEDSEL FKEEVGTCTY PLAVKMEAAA PEEGKSRNAQ ITQVTFVKEK GEVKIRVVKQ LLWVNGARYE LQDIYGTDQG
201: KECVVCLSEA RDTIVLPCRH MCMCSGCAKA LRFQKNECPV CRQPAERLVE LEGNGYSNED KHI
101: FDFEKGGLGH KYVQPSGTGV DLSLFEDSEL FKEEVGTCTY PLAVKMEAAA PEEGKSRNAQ ITQVTFVKEK GEVKIRVVKQ LLWVNGARYE LQDIYGTDQG
201: KECVVCLSEA RDTIVLPCRH MCMCSGCAKA LRFQKNECPV CRQPAERLVE LEGNGYSNED KHI
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.