Factsheet for PGSC0003DMT400004461

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400067619
PGSC0003DMT400069203
PGSC0003DMT400075273
PGSC0003DMT400075274

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53410.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G53410.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G03200.1	PGSC0003DMT400067619	AT5G24920.1	22291198
AT5G03200.1	PGSC0003DMT400075273	AT5G24920.1	22291198
AT5G03200.1	PGSC0003DMT400075274	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007700.2.1	Tomato	plastid	97.8	98.07
PGSC0003DMT400027153	Potato	nucleus, plastid	69.97	80.13
VIT_08s0040g01940.t01	Wine grape	cytosol	76.03	76.24
PGSC0003DMT400045328	Potato	plastid	72.73	75.43
KRH32464	Soybean	plastid	67.77	70.49
CDY41587	Canola	cytosol	52.34	69.09
KRH19856	Soybean	nucleus	65.84	68.48
GSMUA_Achr5P14690_001	Banana	cytosol	55.92	66.12
GSMUA_Achr11P...	Banana	cytosol	53.17	65.2
CDX70325	Canola	cytosol	18.46	65.05
GSMUA_Achr7P01960_001	Banana	cytosol	53.99	64.05
Zm00001d015671_P001	Maize	cytosol	39.67	64.0
GSMUA_Achr2P12340_001	Banana	nucleus	69.15	62.91
CDY41312	Canola	plastid	63.91	62.37
Bra034086.1-P	Field mustard	nucleus, plastid	63.64	62.26
CDY22203	Canola	mitochondrion, plastid	63.64	62.1
KRH67682	Soybean	nucleus	58.13	61.88
AT3G09770.1	Thale cress	plastid	66.12	61.86
KRG95976	Soybean	plastid	61.71	61.2
Bra029788.1-P	Field mustard	nucleus, plastid	63.91	60.89
Zm00001d028475_P002	Maize	cytosol	66.94	60.75
EER92535	Sorghum	nucleus	67.22	60.7
TraesCS4B01G220700.1	Wheat	cytosol	67.22	60.25
TraesCS4D01G221000.1	Wheat	cytosol	66.94	60.0
TraesCS4A01G083500.1	Wheat	cytosol	66.94	60.0
AT3G53410.1	Thale cress	cytosol	49.04	59.53
CDY44729	Canola	plastid	63.64	59.38
Os10t0204100-01	Rice	nucleus	67.49	57.65
CDY67386	Canola	cytosol	45.18	56.75
Bra003133.1-P	Field mustard	nucleus	45.18	56.75
CDY13299	Canola	cytosol	45.45	56.12
HORVU0Hr1G008700.4	Barley	cytosol	64.74	55.42
Bra009546.1-P	Field mustard	cytosol	44.08	53.87
KRH05126	Soybean	cytosol	14.33	53.61
CDY10400	Canola	cytosol	43.53	53.02
CDY44348	Canola	cytosol	38.29	52.85
CDY62899	Canola	cytosol	38.29	52.26
Bra028846.1-P	Field mustard	cytosol	38.29	52.26
AT5G03200.1	Thale cress	mitochondrion	48.21	51.93
TraesCS7B01G390000.1	Wheat	mitochondrion	38.57	50.72
CDX70324	Canola	cytosol	23.42	50.6
TraesCS7D01G473200.1	Wheat	cytosol	41.32	49.51
TraesCS7A01G486700.1	Wheat	cytosol	40.77	48.84
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	63.64	48.02
Os01t0374900-01	Rice	plastid	40.22	46.65
HORVU7Hr1G109550.2	Barley	cytosol	40.77	44.98
PGSC0003DMT400073576	Potato	plastid	42.42	40.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400004461	EnsemblPlantsGene:PGSC0003DMG400001777	EntrezGene:102594177	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PGSC:PGSC0003DMG400001777	RefSeq:XP_006361815.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002956430
UniProt:M0ZNH5	MapMan:35.1	:	:	:	:

Description

Zinc finger, RING-type [Source:PGSC_GENE;Acc:PGSC0003DMG400001777]

Coordinates

chr9:+:6040019..6045770

Molecular Weight (calculated)

40115.4 Da

IEP (calculated)

5.655

GRAVY (calculated)

-0.564

Length

363 amino acids

Sequence
(BLAST)

001: MGNMGSSGVN GRRRSSSRRS HPPPPPQPQP PQPEINANRY VFAAATPYPT TQYPNPNAPP YYQYPGYYPP PPAAMPVPLP ASYDHHHRID PGHANWVNGR
101: YPCGPMMPPP APYVEHQKAV TIRNDVNLKK ETLRIEPDEA NPGKYLVAFT FDATVSGSMT VIFFAKEGED CCLTPMKESL LPPVTFEFQK GLAQKFRQPS
201: GTGIDFSMFE EAELSKDSEA DVYPLAVKAE ATLDNPSESE DGSAASGSTN SQITQAVFGK DRGEYHVRVV KQILWVNGMR YELQEIFGIG NSVESDFDGN
301: DPGKECVICL SEPRDTTVLP CRHMCMCSGC AKVLRFQTNR CPICRQPVER LLEIKVSEGA AEE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.