CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68780
CDX76795
CDX92732
CDX94417
CDY34757
CDY68098
CDY72356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	CDX76795	AT2G24762.1	22291198
AT3G09770.1	CDY34757	AT2G24762.1	22291198
AT3G09770.1	CDX92732	AT4G25760.1	22291198
AT3G09770.1	CDX94417	AT4G25760.1	22291198
AT3G09770.1	CDY68098	AT4G25760.1	22291198
AT3G09770.1	CDY72356	AT4G25760.1	22291198
AT3G09770.1	CDX68780	AT4G31730.1	22291198
AT3G09770.1	CDX68780	AT4G31730.1	24036454

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034086.1-P	Field mustard	nucleus, plastid	98.39	98.65
CDY22203	Canola	mitochondrion, plastid	94.09	94.09
CDY41587	Canola	cytosol	58.87	79.64
AT3G09770.1	Thale cress	plastid	71.51	68.56
CDY44729	Canola	plastid	71.51	68.38
CDX70325	Canola	cytosol	18.82	67.96
PGSC0003DMT400004461	Potato	plastid	62.37	63.91
Solyc09g007700.2.1	Tomato	plastid	62.1	63.81
Solyc10g084100.1.1	Tomato	nucleus, plastid	54.03	63.01
PGSC0003DMT400027153	Potato	nucleus, plastid	53.49	62.78
VIT_08s0040g01940.t01	Wine grape	cytosol	60.75	62.43
KRH32464	Soybean	plastid	57.53	61.32
Solyc10g086080.1.1	Tomato	nucleus	54.57	60.6
PGSC0003DMT400045328	Potato	plastid	56.99	60.57
KRH19856	Soybean	nucleus	56.72	60.46
GSMUA_Achr5P14690_001	Banana	cytosol	49.46	59.93
CDY44348	Canola	cytosol	42.2	59.7
CDX70324	Canola	cytosol	26.88	59.52
Zm00001d015671_P001	Maize	cytosol	35.75	59.11
CDY62899	Canola	cytosol	42.2	59.02
CDY10400	Canola	cytosol	46.77	58.39
CDY67386	Canola	cytosol	45.16	58.13
GSMUA_Achr11P...	Banana	cytosol	45.97	57.77
GSMUA_Achr7P01960_001	Banana	cytosol	47.04	57.19
CDY13299	Canola	cytosol	45.16	57.14
CDY13950	Canola	cytosol	15.05	56.57
KRH67682	Soybean	nucleus	51.61	56.3
KRG95976	Soybean	plastid	53.76	54.64
EER92535	Sorghum	nucleus	58.06	53.73
TraesCS4D01G221000.1	Wheat	cytosol	58.33	53.58
TraesCS4B01G220700.1	Wheat	cytosol	58.06	53.33
Zm00001d028475_P002	Maize	cytosol	57.26	53.25
TraesCS4A01G083500.1	Wheat	cytosol	57.8	53.09
GSMUA_Achr2P12340_001	Banana	nucleus	56.72	52.88
KRH05126	Soybean	cytosol	13.44	51.55
Os10t0204100-01	Rice	nucleus	58.6	51.29
HORVU0Hr1G008700.4	Barley	cytosol	55.65	48.82
TraesCS7B01G390000.1	Wheat	mitochondrion	35.75	48.19
TraesCS7D01G473200.1	Wheat	cytosol	38.17	46.86
TraesCS7A01G486700.1	Wheat	cytosol	38.17	46.86
CDY13958	Canola	cytosol	23.66	45.83
Os01t0374900-01	Rice	plastid	38.44	45.69
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.84	42.41
HORVU7Hr1G109550.2	Barley	cytosol	36.56	41.34
CDY24715	Canola	mitochondrion	37.63	38.57
CDX92559	Canola	mitochondrion	38.44	38.44
CDY05235	Canola	mitochondrion	37.63	38.36
CDY13949	Canola	mitochondrion	38.71	37.31
Solyc04g054680.1.1	Tomato	cytosol	34.68	36.03
Solyc04g054650.1.1	Tomato	cytosol	35.75	27.37

Protein Annotations

EnsemblPlants:CDY41312	EnsemblPlantsGene:GSBRNA2T00072860001	Gene3D:3.30.40.10	GO:A0A078HTY0	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY41312	ProteinID:CDY41312.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF02E4
UniProt:A0A078HTY0	MapMan:35.1	:	:	:	:

Description

BnaA01g32070DBnaA01g32070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTY0]

Coordinates

chrLK032495:-:52904..54476

Molecular Weight (calculated)

40951.4 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.687

Length

372 amino acids

Sequence
(BLAST)

001: MGNISSSGGG GDGRRRRQQR RSNTLPSPSP PPPPPPSLPP PPPPNRIVFA AATPYPNPNY QYPGYYPPPP PGPYDQHHHI HYPPPPQQHP YHHPYGRYPY
101: NGPMMPPQLP CVEHQKAVTI RNDVNLKKES LKLEPDPVNP GRVLVSFTFD ATVPGRITVI FFAKETEQCV LTATKEDTLP PITMDFEKGL GQKFKQPPGS
201: GIDLSLFEDS ELFKAAALET DVYPLAVKAE AVSSGEESLS KNAQITQAVY EKEKGEVKIR VVKQILWVNG TRYELQEIYG IGNTVGGDDD GDEDGDDQGK
301: ECVICLSEPS DTTVLPCRHM CMCSGCAKVL RFQTNRCPIC RQPVERLLEI QVHGNSGSGN DAEHGRGTAE QE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.