Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03200.1 | CDX68780 | AT4G31730.1 | 22291198 |
| AT5G03200.1 | CDX80475 | AT5G24920.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70325 | Canola | cytosol | 32.55 | 94.17 |
| CDX70324 | Canola | cytosol | 46.64 | 82.74 |
| CDY44348 | Canola | cytosol | 49.66 | 56.27 |
| CDY41587 | Canola | cytosol | 51.68 | 56.0 |
| CDY62899 | Canola | cytosol | 47.65 | 53.38 |
| AT5G03200.1 | Thale cress | mitochondrion | 55.37 | 48.96 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 50.34 | 47.32 |
| CDY41312 | Canola | plastid | 58.39 | 46.77 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 50.0 | 46.71 |
| Zm00001d015671_P001 | Maize | cytosol | 35.23 | 46.67 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 47.32 | 46.08 |
| CDY22203 | Canola | mitochondrion, plastid | 57.38 | 45.97 |
| GSMUA_Achr11P... | Banana | cytosol | 45.64 | 45.95 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 47.32 | 45.93 |
| CDY67386 | Canola | cytosol | 44.3 | 45.67 |
| CDY13950 | Canola | cytosol | 15.1 | 45.45 |
| CDY13299 | Canola | cytosol | 44.63 | 45.24 |
| KRH19856 | Soybean | nucleus | 52.68 | 44.99 |
| KRH32464 | Soybean | plastid | 52.01 | 44.41 |
| CDY44729 | Canola | plastid | 57.72 | 44.22 |
| PGSC0003DMT400004461 | Potato | plastid | 53.02 | 43.53 |
| KRH67682 | Soybean | nucleus | 49.66 | 43.4 |
| Solyc09g007700.2.1 | Tomato | plastid | 52.01 | 42.82 |
| Solyc10g086080.1.1 | Tomato | nucleus | 47.99 | 42.69 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 39.26 | 42.39 |
| PGSC0003DMT400045328 | Potato | plastid | 49.66 | 42.29 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 51.34 | 42.27 |
| KRG95976 | Soybean | plastid | 50.34 | 40.98 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 40.27 | 39.6 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 39.93 | 39.27 |
| EER92535 | Sorghum | nucleus | 52.01 | 38.56 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 52.01 | 38.27 |
| Zm00001d028475_P002 | Maize | cytosol | 51.34 | 38.25 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 51.01 | 38.1 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 51.68 | 38.02 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 51.68 | 38.02 |
| CDY13958 | Canola | cytosol | 24.5 | 38.02 |
| KRH05126 | Soybean | cytosol | 12.08 | 37.11 |
| Os01t0374900-01 | Rice | plastid | 38.93 | 37.06 |
| Os10t0204100-01 | Rice | nucleus | 52.01 | 36.47 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 38.59 | 34.95 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 48.99 | 34.43 |
| CDY05235 | Canola | mitochondrion | 39.26 | 32.05 |
| CDX92559 | Canola | mitochondrion | 39.93 | 31.99 |
| CDY24715 | Canola | mitochondrion | 38.26 | 31.41 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 50.34 | 31.18 |
| CDY13949 | Canola | mitochondrion | 39.6 | 30.57 |
| Solyc04g054680.1.1 | Tomato | cytosol | 31.88 | 26.54 |
| Solyc04g054650.1.1 | Tomato | cytosol | 34.23 | 20.99 |
Protein Annotations
| EnsemblPlants:CDY10400 | EnsemblPlantsGene:GSBRNA2T00032313001 | Gene3D:3.30.40.10 | GO:A0A078F7B7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDY10400 | ProteinID:CDY10400.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDDF99 | UniProt:A0A078F7B7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng03010DBnaCnng03010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7B7]
Coordinates
chrLK032003:+:264290..265361
Molecular Weight (calculated)
33125.8 Da
IEP (calculated)
5.461
GRAVY (calculated)
-0.298
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNIFCCCGG RRRRSNVPQE ATETTPRQPH PPKIPVNQSV SPVATSYSPP GTMWGAYNHP MPPPRDVVDE KPVTIRNDTN LKKETLTLEQ DPVNPGHLLV
101: AFTFDALVSG RITVVFFAKE SEEFQLTATK EDTLQPITFG FEKGIGQKFI QPSGTGVDLS VFEDSELFKE AETDIFPLAI KLEAAPEGGK SSRCMQITQV
201: TYVKEEGEIK PSVIKQFISV NGTRYELQDI YGIGDAVDEN ARKECVICLS EPRDVTVLPC RHVCMCVGCA KELRFQTNLC PVCRQHVERL LKIPPLID
101: AFTFDALVSG RITVVFFAKE SEEFQLTATK EDTLQPITFG FEKGIGQKFI QPSGTGVDLS VFEDSELFKE AETDIFPLAI KLEAAPEGGK SSRCMQITQV
201: TYVKEEGEIK PSVIKQFISV NGTRYELQDI YGIGDAVDEN ARKECVICLS EPRDVTVLPC RHVCMCVGCA KELRFQTNLC PVCRQHVERL LKIPPLID
001: MGNLISLIFC CGRRQRSNIP PAMETAPLEL PPNRFVFAAV PPYLNPNPNY VDQYPGNCLP PPVTEPPMLP YNFNHLHHYP PNSYQLPHPL FHGGRYPILP
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG
Arabidopsis Description
LUL1Probable E3 ubiquitin-protein ligase LUL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.