Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24920.1 | CDY22203 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | CDY41312 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | CDY41587 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | CDY44729 | AT3G09770.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009804.1-P | Field mustard | extracellular | 65.69 | 90.0 |
| AT5G24920.1 | Thale cress | golgi, plasma membrane, plastid | 55.47 | 58.02 |
| CDY13451 | Canola | plasma membrane | 37.23 | 39.23 |
| CDX92732 | Canola | plasma membrane | 35.77 | 36.3 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 36.5 | 36.23 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 36.5 | 36.23 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 35.04 | 34.78 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 37.23 | 33.77 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 40.15 | 33.54 |
| CDX68780 | Canola | mitochondrion | 40.15 | 33.13 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 37.23 | 31.1 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 33.58 | 30.67 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 33.58 | 30.67 |
| Solyc12g096480.1.1 | Tomato | plastid | 33.58 | 30.26 |
| KRH15701 | Soybean | plastid | 39.42 | 29.67 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 38.69 | 29.12 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 37.23 | 28.65 |
| PGSC0003DMT400075274 | Potato | plastid | 30.66 | 26.75 |
| KRH05332 | Soybean | plastid | 33.58 | 26.14 |
Protein Annotations
| EnsemblPlants:CDX80475 | EnsemblPlantsGene:GSBRNA2T00133567001 | GO:A0A078CUF7 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0080143 |
| PANTHER:PTHR33228 | PANTHER:PTHR33228:SF16 | ProteinID:CDX80475 | ProteinID:CDX80475.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EC0AB1 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g29690DProtein GLUTAMINE DUMPER 5 [Source:Projected from Arabidopsis thaliana (AT5G24920) UniProtKB/Swiss-Prot;Acc:Q3E965]
Coordinates
chrLK031821:+:807249..807832
Molecular Weight (calculated)
15149.1 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.247
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNFPNITDH KMSTIVESQT RHPWRTPVPY LFGGLAAMLG LIAFALLLLA CSYWSLSRRT DSEKPTETDE KVTAKVFEEK ILVIMAGHNK PTFLATPVAA
101: KTCVSSVECV IREGKEGQNG ESTEIKGPSF SSDEETQ
101: KTCVSSVECV IREGKEGQNG ESTEIKGPSF SSDEETQ
001: MRQFPSIRGN INEKMMTTMV ESQTRSPWRT PVPYLFGGLA AMLGLIAFAL LLLACSYWRL SRQTEDEEKQ TESGEKVVAK AFEEKILVIM AGQNNPTFLA
101: TPVAAKICLD CVNMEKKEGQ NGESKVTEEN H
101: TPVAAKICLD CVNMEKKEGQ NGESKVTEEN H
Arabidopsis Description
GDU5Protein GLUTAMINE DUMPER 5 [Source:UniProtKB/Swiss-Prot;Acc:Q3E965]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.