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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g054650.1.1
Solyc04g054680.1.1
Solyc09g007700.2.1
Solyc10g084100.1.1
Solyc10g086080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G24920.1 Solyc04g054650.1.1 AT3G09770.1 22291198
AT5G24920.1 Solyc04g054680.1.1 AT3G09770.1 22291198
AT5G24920.1 Solyc09g007700.2.1 AT3G09770.1 22291198
AT5G24920.1 Solyc10g084100.1.1 AT3G09770.1 22291198
AT5G24920.1 Solyc10g086080.1.1 AT3G09770.1 22291198
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400067619 Potato mitochondrion 76.97 75.27
VIT_04s0008g07370.t01 Wine grape plastid 42.13 43.86
AT5G24920.1 Thale cress golgi, plasma membrane, plastid 32.02 43.51
Solyc02g089450.1.1 Tomato plastid 23.03 41.84
Solyc12g096490.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid 38.2 41.46
Zm00001d036703_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 33.15 40.69
GSMUA_Achr7P16360_001 Banana endoplasmic reticulum, extracellular, plasma membrane 22.47 39.6
Solyc12g096480.1.1 Tomato plastid 33.71 39.47
GSMUA_Achr1P23400_001 Banana cytosol, mitochondrion, plasma membrane 33.71 38.22
GSMUA_Achr11P... Banana extracellular, golgi, mitochondrion, plastid 32.02 37.5
CDX80475 Canola cytosol, endoplasmic reticulum, plasma membrane 28.65 37.23
Zm00001d032115_P001 Maize extracellular, golgi, plasma membrane 36.52 36.52
TraesCS4D01G079800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.15 36.2
TraesCS4B01G081100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 32.58 36.02
Solyc02g089460.1.1 Tomato endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid 20.22 35.64
GSMUA_Achr7P05080_001 Banana endoplasmic reticulum, plasma membrane, plastid 29.78 35.57
Os08t0446800-01 Rice endoplasmic reticulum, extracellular, plasma membrane 35.96 35.56
TraesCS7A01G498100.1 Wheat endoplasmic reticulum 37.64 35.45
TraesCS4A01G234200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.71 35.29
Zm00001d053729_P001 Maize plastid 28.65 35.17
GSMUA_Achr10P... Banana golgi, plasma membrane, plastid 33.15 35.12
Bra009804.1-P Field mustard extracellular 19.66 35.0
TraesCS6A01G150800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 32.02 34.13
TraesCS6D01G140800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 32.58 34.12
Solyc02g089480.1.1 Tomato plasma membrane 23.03 33.88
HORVU7Hr1G111310.2 Barley endoplasmic reticulum, mitochondrion, plasma membrane 34.27 33.7
Os06t0654400-00 Rice endoplasmic reticulum, nucleus, plasma membrane 34.83 33.7
Zm00001d050079_P001 Maize extracellular, golgi, plasma membrane 35.39 33.16
Zm00001d046927_P001 Maize endoplasmic reticulum, mitochondrion, plasma membrane 34.27 33.15
TraesCS7B01G405000.1 Wheat endoplasmic reticulum, mitochondrion, plasma membrane 37.64 33.0
Solyc07g006600.1.1 Tomato endoplasmic reticulum, nucleus, plastid 34.27 32.97
EES13936 Sorghum endoplasmic reticulum, extracellular, plasma membrane 32.58 32.77
EER88756 Sorghum endoplasmic reticulum, extracellular, plasma membrane 35.39 32.64
TraesCS6B01G178900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 31.46 32.56
HORVU6Hr1G030050.2 Barley peroxisome, vacuole 33.15 31.89
TraesCS7D01G485400.1 Wheat golgi, mitochondrion, plasma membrane 36.52 31.86
EER90144 Sorghum endoplasmic reticulum, plasma membrane, plastid 34.27 31.44
KRH15701 Soybean plastid 32.02 31.32
KRH05332 Soybean plastid 30.9 31.25
Zm00001d024198_P001 Maize plastid 30.34 30.86
HORVU4Hr1G013760.1 Barley golgi, mitochondrion, plasma membrane, plastid 32.58 30.85
TraesCS7D01G485100.1 Wheat endoplasmic reticulum, nucleus, peroxisome 34.83 30.39
EES13610 Sorghum plastid 30.9 30.39
EES06373 Sorghum endoplasmic reticulum, nucleus, plasma membrane, plastid 32.58 28.71
TraesCS7A01G497800.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 33.15 28.64
HORVU7Hr1G111320.1 Barley endoplasmic reticulum, peroxisome, plastid 34.27 28.64
HORVU1Hr1G003070.1 Barley endoplasmic reticulum, peroxisome, plastid 34.27 28.64
TraesCS7D01G485300.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 34.27 28.24
HORVU1Hr1G003060.2 Barley endoplasmic reticulum, mitochondrion, plasma membrane 33.71 28.04
TraesCS7B01G404600.1 Wheat endoplasmic reticulum 35.39 27.75
TraesCS7A01G498000.1 Wheat endoplasmic reticulum, mitochondrion, plasma membrane 30.9 27.64
TraesCS7B01G404900.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 33.15 27.31
TraesCS7A01G497900.1 Wheat endoplasmic reticulum 33.15 27.31
TraesCS7D01G485200.1 Wheat vacuole 32.58 27.23
Zm00001d015470_P001 Maize plastid 29.78 27.18
HORVU1Hr1G003080.1 Barley endoplasmic reticulum, nucleus, plasma membrane 32.02 26.27
HORVU7Hr1G111350.1 Barley endoplasmic reticulum, nucleus, plasma membrane 32.02 26.27
Os08t0249200-00 Rice plastid 28.65 25.89
HORVU0Hr1G022370.1 Barley mitochondrion 34.83 25.1
TraesCS7B01G404700.1 Wheat cytosol, endoplasmic reticulum, plastid 30.9 20.91
Protein Annotations
EnsemblPlants:Solyc08g006520.1.1EnsemblPlantsGene:Solyc08g006520.1GO:GO:0005575GO:GO:0016020GO:GO:0016021ncoils:Coil
PANTHER:PTHR33228PANTHER:PTHR33228:SF5SEG:segTMHMM:TMhelixUniParc:UPI000276C045UniProt:K4CIE0
MapMan:35.2:::::
Description
No Description!
Coordinates
chr8:-:1130492..1131028
Molecular Weight (calculated)
19646.5 Da
IEP (calculated)
4.545
GRAVY (calculated)
-0.342
Length
178 amino acids
Sequence
(BLAST)
001: MRTVIDLSNF EQSKSTVKAT FSPPAMSQRS PWHSPVPYLF GGLAAMLGLI AVALLILACS YWKLSGHLRE NGEIDHDSEV DPESGDGEKP AIGIMKAMPV
101: FEEKIVVIMA GDLRPSFLAT PVMSKNSVLG DESDLNKFEK KLEKETEELG DGKEKEEVVI EVTEMNHGES QNINRQNQ
Best Arabidopsis Sequence Match ( AT4G31730.1 )
(BLAST)
001: MRPLSVQSKF EDVATSTSVN HHGVTPQSPW HSPVPYLFGG LAAMLGLIAF ALLILACSYW RLSSSGEEDG QNVDEEKESR SGDKAANGAY EEKFLVIMAG
101: EDLPRYLATP AMKKCTCGGH EGKMVISQEE SVAKEEEKMR EGEEEKVKDT GETTTTSH
Arabidopsis Description
GDU1Protein GLUTAMINE DUMPER 1 [Source:UniProtKB/Swiss-Prot;Acc:O81775]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.