Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- plastid 2
- plasma membrane 4
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003752 | Potato | plastid | 73.55 | 72.36 |
| PGSC0003DMT400075948 | Potato | plastid | 73.55 | 72.36 |
| VIT_14s0083g00670.t01 | Wine grape | plastid | 34.71 | 42.0 |
| Solyc02g089450.1.1 | Tomato | plastid | 30.58 | 37.76 |
| KRH01450 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 33.88 | 37.27 |
| KRG93760 | Soybean | plastid | 32.23 | 36.79 |
| KRH45165 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 33.06 | 34.19 |
| Solyc02g089460.1.1 | Tomato | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 28.1 | 33.66 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 32.23 | 23.78 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 33.88 | 23.03 |
| Solyc12g096480.1.1 | Tomato | plastid | 27.27 | 21.71 |
| Solyc07g006600.1.1 | Tomato | endoplasmic reticulum, nucleus, plastid | 32.23 | 21.08 |
Protein Annotations
| EnsemblPlants:Solyc02g089480.1.1 | EnsemblPlantsGene:Solyc02g089480.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33228 |
| PANTHER:PTHR33228:SF5 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002768C4C | UniProt:K4BC99 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:-:51294999..51295364
Molecular Weight (calculated)
13354.4 Da
IEP (calculated)
9.042
GRAVY (calculated)
-0.138
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNMMMMKP SHNATSTLLV DSGITKWNSP VPYLFGGLAI ILGLIALALL VVTCSYKKPS TEESSSRSNN VNDLDHGQDK KTIELMKPEM EPKFVVIMPG
101: DYNPTWLAKP TLPIRYGPNK V
101: DYNPTWLAKP TLPIRYGPNK V
1: MSLHRDSMVP VNSRLENMDS PILSKICAWG VMLGLFALSL FAMAYACYHK QTSNSCIEEK QGKKQVLKPL DMEPKIVVIM AGNENPTFFA KPTQINA
Arabidopsis Description
GDU7GDU7 [Source:UniProtKB/TrEMBL;Acc:A0A178UB13]
SUBAcon: [nucleus,endoplasmic reticulum,plasma membrane]
SUBAcon: [nucleus,endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.