Factsheet for Solyc12g096480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g054650.1.1
Solyc04g054680.1.1
Solyc09g007700.2.1
Solyc10g084100.1.1
Solyc10g086080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24920.1	Solyc04g054650.1.1	AT3G09770.1	22291198
AT5G24920.1	Solyc04g054680.1.1	AT3G09770.1	22291198
AT5G24920.1	Solyc09g007700.2.1	AT3G09770.1	22291198
AT5G24920.1	Solyc10g084100.1.1	AT3G09770.1	22291198
AT5G24920.1	Solyc10g086080.1.1	AT3G09770.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075274	Potato	plastid	65.13	63.06
Solyc12g096490.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	48.68	45.12
AT5G24920.1	Thale cress	golgi, plasma membrane, plastid	32.24	37.4
Solyc02g089450.1.1	Tomato	plastid	23.68	36.73
Bra009804.1-P	Field mustard	extracellular	23.03	35.0
VIT_04s0008g07370.t01	Wine grape	plastid	38.82	34.5
GSMUA_Achr11P...	Banana	extracellular, golgi, mitochondrion, plastid	34.21	34.21
Zm00001d036703_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	32.24	33.79
Solyc08g006520.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane, plastid	39.47	33.71
CDX80475	Canola	cytosol, endoplasmic reticulum, plasma membrane	30.26	33.58
GSMUA_Achr7P05080_001	Banana	endoplasmic reticulum, plasma membrane, plastid	32.24	32.89
GSMUA_Achr1P23400_001	Banana	cytosol, mitochondrion, plasma membrane	33.55	32.48
TraesCS4D01G079800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	34.21	31.9
TraesCS4A01G234200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	35.53	31.76
GSMUA_Achr7P16360_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	21.05	31.68
Os08t0446800-01	Rice	endoplasmic reticulum, extracellular, plasma membrane	36.84	31.11
TraesCS4B01G081100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.89	31.06
GSMUA_Achr10P...	Banana	golgi, plasma membrane, plastid	33.55	30.36
Zm00001d032115_P001	Maize	extracellular, golgi, plasma membrane	35.53	30.34
Solyc07g006600.1.1	Tomato	endoplasmic reticulum, nucleus, plastid	36.84	30.27
EES13936	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	34.87	29.94
Solyc02g089460.1.1	Tomato	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	19.74	29.7
Zm00001d053729_P001	Maize	plastid	28.29	29.66
Zm00001d050079_P001	Maize	extracellular, golgi, plasma membrane	36.84	29.47
Os06t0654400-00	Rice	endoplasmic reticulum, nucleus, plasma membrane	34.87	28.8
KRH15701	Soybean	plastid	34.21	28.57
Zm00001d046927_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	33.55	27.72
EER90144	Sorghum	endoplasmic reticulum, plasma membrane, plastid	34.87	27.32
Solyc02g089480.1.1	Tomato	plasma membrane	21.71	27.27
EES06373	Sorghum	endoplasmic reticulum, nucleus, plasma membrane, plastid	36.18	27.23
HORVU4Hr1G013760.1	Barley	golgi, mitochondrion, plasma membrane, plastid	33.55	27.13
EER88756	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	34.21	26.94
Zm00001d024198_P001	Maize	plastid	30.92	26.86
TraesCS7A01G497800.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	36.18	26.7
TraesCS7A01G498100.1	Wheat	endoplasmic reticulum	32.89	26.45
EES13610	Sorghum	plastid	30.92	25.97
HORVU7Hr1G111310.2	Barley	endoplasmic reticulum, mitochondrion, plasma membrane	30.92	25.97
TraesCS7A01G498000.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	33.55	25.63
TraesCS7B01G405000.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	34.21	25.62
KRH05332	Soybean	plastid	29.61	25.57
TraesCS7A01G497900.1	Wheat	endoplasmic reticulum	36.18	25.46
HORVU7Hr1G111320.1	Barley	endoplasmic reticulum, peroxisome, plastid	35.53	25.35
HORVU1Hr1G003070.1	Barley	endoplasmic reticulum, peroxisome, plastid	35.53	25.35
TraesCS6A01G150800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	27.63	25.15
TraesCS7B01G404900.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	35.53	25.0
TraesCS7D01G485100.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	32.89	24.51
TraesCS7D01G485400.1	Wheat	golgi, mitochondrion, plasma membrane	32.89	24.51
TraesCS6B01G178900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	27.63	24.42
HORVU1Hr1G003060.2	Barley	endoplasmic reticulum, mitochondrion, plasma membrane	34.21	24.3
Zm00001d015470_P001	Maize	plastid	30.92	24.1
TraesCS7D01G485300.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	34.21	24.07
TraesCS6D01G140800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	26.32	23.53
HORVU7Hr1G111350.1	Barley	endoplasmic reticulum, nucleus, plasma membrane	33.55	23.5
HORVU1Hr1G003080.1	Barley	endoplasmic reticulum, nucleus, plasma membrane	33.55	23.5
TraesCS7D01G485200.1	Wheat	vacuole	32.89	23.47
Os08t0249200-00	Rice	plastid	29.61	22.84
HORVU6Hr1G030050.2	Barley	peroxisome, vacuole	26.32	21.62
TraesCS7B01G404600.1	Wheat	endoplasmic reticulum	32.24	21.59
TraesCS7B01G404700.1	Wheat	cytosol, endoplasmic reticulum, plastid	36.18	20.91
HORVU0Hr1G022370.1	Barley	mitochondrion	30.26	18.62

Protein Annotations

EnsemblPlants:Solyc12g096480.1.1	EnsemblPlantsGene:Solyc12g096480.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR33228	PANTHER:PTHR33228:SF5	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769D3D	UniProt:K4DHC1
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:65382204..65382662

Molecular Weight (calculated)

16518.4 Da

IEP (calculated)

4.591

GRAVY (calculated)

-0.307

Length

152 amino acids

Sequence
(BLAST)

001: MRTVSTFTTA SPSVSPSAIV QKSPWHSPAP YLFAGVASML VLITFALVIL ACSYWRRSGY PRENGDVESG DGEKSTGDVF KASPVFEEKI VVIMAGDLNP
101: TFLATPISSR GNSFGAGDKI EKKLEKETEE FDDEKAKDEA MDQAHEESQI GH

Best Arabidopsis Sequence Match ( AT4G25760.1 )
(BLAST)

001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG

Arabidopsis Description

GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.