Factsheet for Bra009804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029788.1-P
Bra034086.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24920.1	Bra029788.1-P	AT3G09770.1	22291198
AT5G24920.1	Bra034086.1-P	AT3G09770.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80475	Canola	cytosol, endoplasmic reticulum, plasma membrane	90.0	65.69
AT5G24920.1	Thale cress	golgi, plasma membrane, plastid	52.0	39.69
Bra002705.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	43.0	29.25
Bra002707.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	43.0	29.25
Bra006808.1-P	Field mustard	plasma membrane	40.0	27.4
Bra013917.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	36.0	26.09
Bra020422.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	38.0	25.68
Bra019142.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	35.0	25.36
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	38.0	25.17
Bra023987.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	39.0	23.78
Bra011294.1-P	Field mustard	mitochondrion	39.0	23.49
Solyc12g096490.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	38.0	23.17
Solyc12g096480.1.1	Tomato	plastid	35.0	23.03
KRH15701	Soybean	plastid	41.0	22.53
Bra007834.1-P	Field mustard	golgi, mitochondrion, plasma membrane	33.0	22.0
PGSC0003DMT400075274	Potato	plastid	34.0	21.66
PGSC0003DMT400067619	Potato	mitochondrion	38.0	20.88
Solyc08g006520.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane, plastid	35.0	19.66
KRH05332	Soybean	plastid	33.0	18.75
Bra020423.1-P	Field mustard	cytosol	19.0	17.43

Protein Annotations

EnsemblPlants:Bra009804.1	EnsemblPlants:Bra009804.1-P	EnsemblPlantsGene:Bra009804	GO:GO:0006810	GO:GO:0008150	GO:GO:0080143
PANTHER:PTHR33228	PANTHER:PTHR33228:SF16	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000253F271	UniProt:M4D007
MapMan:35.1	:	:	:	:	:

Description

AT5G24920 (E=1e-023) AtGDU5 | AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)

Coordinates

chrA06:+:17395435..17395737

Molecular Weight (calculated)

10843.9 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.073

Length

100 amino acids

Sequence
(BLAST)

1: MLGLIAFALL LLACSYWSLS RRTDSEKQTE TDEKVTAKVF EEKILVIMAG HNKPTFLATP VAAKTCVSSL ECVITEDKEG QNGESTGIKA SLFSSDEGNQ

Best Arabidopsis Sequence Match ( AT5G24920.1 )
(BLAST)

001: MRQFPSIRGN INEKMMTTMV ESQTRSPWRT PVPYLFGGLA AMLGLIAFAL LLLACSYWRL SRQTEDEEKQ TESGEKVVAK AFEEKILVIM AGQNNPTFLA
101: TPVAAKICLD CVNMEKKEGQ NGESKVTEEN H

Arabidopsis Description

GDU5Protein GLUTAMINE DUMPER 5 [Source:UniProtKB/Swiss-Prot;Acc:Q3E965]
SUBAcon: [plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.