Factsheet for Bra034086.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007834.1-P
Bra011294.1-P
Bra013917.1-P
Bra019142.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	Bra007834.1-P	AT2G24762.1	22291198
AT3G09770.1	Bra013917.1-P	AT4G25760.1	22291198
AT3G09770.1	Bra019142.1-P	AT4G25760.1	22291198
AT3G09770.1	Bra011294.1-P	AT4G31730.1	22291198
AT3G09770.1	Bra011294.1-P	AT4G31730.1	24036454

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41312	Canola	plastid	98.65	98.39
Bra029788.1-P	Field mustard	nucleus, plastid	72.51	70.6
AT3G09770.1	Thale cress	plastid	72.24	69.07
PGSC0003DMT400004461	Potato	plastid	62.26	63.64
Solyc09g007700.2.1	Tomato	plastid	61.99	63.54
Solyc10g084100.1.1	Tomato	nucleus, plastid	53.91	62.7
PGSC0003DMT400027153	Potato	nucleus, plastid	53.37	62.46
VIT_08s0040g01940.t01	Wine grape	cytosol	60.65	62.15
KRH32464	Soybean	plastid	57.14	60.74
Solyc10g086080.1.1	Tomato	nucleus	54.45	60.3
PGSC0003DMT400045328	Potato	plastid	56.87	60.29
KRH19856	Soybean	nucleus	56.6	60.17
GSMUA_Achr5P14690_001	Banana	cytosol	49.6	59.93
Zm00001d015671_P001	Maize	cytosol	36.12	59.56
Bra028846.1-P	Field mustard	cytosol	42.05	58.65
Bra009546.1-P	Field mustard	cytosol	46.9	58.59
Bra003133.1-P	Field mustard	nucleus	45.01	57.79
GSMUA_Achr11P...	Banana	cytosol	45.82	57.43
GSMUA_Achr7P01960_001	Banana	cytosol	46.63	56.54
KRH67682	Soybean	nucleus	51.48	56.01
KRG95976	Soybean	plastid	53.64	54.37
EER92535	Sorghum	nucleus	58.22	53.73
TraesCS4D01G221000.1	Wheat	cytosol	57.95	53.09
Zm00001d028475_P002	Maize	cytosol	57.14	53.0
GSMUA_Achr2P12340_001	Banana	nucleus	56.87	52.88
TraesCS4B01G220700.1	Wheat	cytosol	57.68	52.84
TraesCS4A01G083500.1	Wheat	cytosol	57.41	52.59
KRH05126	Soybean	cytosol	13.48	51.55
Os10t0204100-01	Rice	nucleus	58.49	51.06
TraesCS7B01G390000.1	Wheat	mitochondrion	36.39	48.91
HORVU0Hr1G008700.4	Barley	cytosol	55.8	48.82
TraesCS7D01G473200.1	Wheat	cytosol	38.81	47.52
TraesCS7A01G486700.1	Wheat	cytosol	38.54	47.19
Os01t0374900-01	Rice	plastid	38.81	46.01
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.72	42.2
HORVU7Hr1G109550.2	Barley	cytosol	37.2	41.95
Bra020773.1-P	Field mustard	mitochondrion	37.2	38.02
Bra002208.1-P	Field mustard	mitochondrion, nucleus	38.01	37.7
Solyc04g054680.1.1	Tomato	cytosol	34.5	35.75
Solyc04g054650.1.1	Tomato	cytosol	35.85	27.37

Protein Annotations

EnsemblPlants:Bra034086.1	EnsemblPlants:Bra034086.1-P	EnsemblPlantsGene:Bra034086	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025441B9	UniProt:M4EZ43	MapMan:35.1

Description

AT3G09770 (E=3e-114) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:+:27536581..27537847

Molecular Weight (calculated)

40876.2 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.706

Length

371 amino acids

Sequence
(BLAST)

001: MGNISSSGGG DGRRRRQQRR SNTLPSPSPP PPPPPSLPPP PPPNRIVFAA ATPYPNPNYQ YPGYYPPPPP GPYDQHHHIH YPPPPQQHPY HHPYGRYPYN
101: GPMMPPQLPC VEHQKAVTIR NDVNLKKESL KLEPDPDNPT RVLVSFTFDA TVPGRITVIF FAKETEQCVL TATKEDTLPP ITMDFEKGLG QKFKQPPGSG
201: IDLSLFEDSE LFKAAALETD VYPLAVKAEA VSSGEESLSK NAQITQAVYE KEKGEVKIRV VKQILWVNGT RYELQEIYGI GNTVGGDDDG DEDGDDQGKE
301: CVICLSEPSD TTVLPCRHMC MCSGCAKVLR FQTNRCPICR QPVERLLEIQ VHGNSGSGND TEQGGGTAEQ E

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.