Factsheet for GSMUA_Achr2P12340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P23400_001
GSMUA_Achr7P05080_001
GSMUA_Achr7P16360_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	GSMUA_Achr10P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	24036454
AT3G53410.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G53410.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr10P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT5G57685.1	22291198
AT5G03200.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14690_001	Banana	cytosol	63.66	82.74
GSMUA_Achr7P01960_001	Banana	cytosol	60.15	78.43
Zm00001d015671_P001	Maize	cytosol	40.1	71.11
GSMUA_Achr11P...	Banana	cytosol	52.13	70.27
Solyc09g007700.2.1	Tomato	plastid	62.91	69.34
PGSC0003DMT400004461	Potato	plastid	62.91	69.15
VIT_08s0040g01940.t01	Wine grape	cytosol	61.15	67.4
CDX70325	Canola	cytosol	17.29	66.99
CDY41587	Canola	cytosol	46.12	66.91
Solyc10g084100.1.1	Tomato	nucleus, plastid	53.13	66.46
PGSC0003DMT400027153	Potato	nucleus, plastid	52.13	65.62
TraesCS4B01G220700.1	Wheat	cytosol	64.91	63.95
TraesCS4D01G221000.1	Wheat	cytosol	64.91	63.95
EER92535	Sorghum	nucleus	64.41	63.93
KRH32464	Soybean	plastid	55.89	63.9
TraesCS4A01G083500.1	Wheat	cytosol	64.66	63.7
Zm00001d028475_P002	Maize	cytosol	63.41	63.25
VIT_06s0004g02970.t01	Wine grape	mitochondrion	55.14	63.04
Os10t0204100-01	Rice	nucleus	66.42	62.35
KRH19856	Soybean	nucleus	53.88	61.6
Solyc10g086080.1.1	Tomato	nucleus	51.63	61.49
PGSC0003DMT400045328	Potato	plastid	52.63	60.0
AT3G53410.1	Thale cress	cytosol	44.36	59.2
HORVU0Hr1G008700.4	Barley	cytosol	62.41	58.73
Bra029788.1-P	Field mustard	nucleus, plastid	54.89	57.48
AT3G09770.1	Thale cress	plastid	55.64	57.22
CDY67386	Canola	cytosol	41.35	57.09
Bra003133.1-P	Field mustard	nucleus	41.35	57.09
CDY22203	Canola	mitochondrion, plastid	53.13	56.99
Bra034086.1-P	Field mustard	nucleus, plastid	52.88	56.87
CDY41312	Canola	plastid	52.88	56.72
KRH67682	Soybean	nucleus	48.37	56.6
CDY44729	Canola	plastid	54.64	56.04
KRG95976	Soybean	plastid	51.38	56.01
CDY13299	Canola	cytosol	41.1	55.78
TraesCS7B01G390000.1	Wheat	mitochondrion	37.09	53.62
KRH22903	Soybean	mitochondrion, nucleus	40.35	52.1
CDY44348	Canola	cytosol	34.09	51.71
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	62.16	51.56
AT5G03200.1	Thale cress	mitochondrion	43.36	51.34
Bra009546.1-P	Field mustard	cytosol	38.1	51.18
CDY10400	Canola	cytosol	38.1	51.01
GSMUA_Achr3P09070_001	Banana	cytosol	35.09	50.91
TraesCS7A01G486700.1	Wheat	cytosol	38.6	50.83
TraesCS7D01G473200.1	Wheat	cytosol	38.1	50.16
CDY62899	Canola	cytosol	33.33	50.0
Bra028846.1-P	Field mustard	cytosol	33.33	50.0
Os01t0374900-01	Rice	plastid	38.85	49.52
KRH05126	Soybean	cytosol	11.78	48.45
CDX70324	Canola	cytosol	19.8	47.02
HORVU7Hr1G109550.2	Barley	cytosol	37.84	45.9
Solyc04g054680.1.1	Tomato	cytosol	33.08	36.87
Solyc04g054650.1.1	Tomato	cytosol	35.34	29.01

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12340_001	EnsemblPlants:GSMUA_Achr2T12340_001	EnsemblPlantsGene:GSMUA_Achr2G12340_001	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296402E
UniProt:M0S7C5	MapMan:35.1	:	:	:	:

Description

Zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G12340_001]

Coordinates

chr2:-:14812258..14816802

Molecular Weight (calculated)

43693.4 Da

IEP (calculated)

6.618

GRAVY (calculated)

-0.642

Length

399 amino acids

Sequence
(BLAST)

001: MGNAGSSGNG GGGDGAGVGS VRRRNSGRHH HHHHHPLPFG PSPAPQPPQP QQPPEASANR YVFAAVTPYP PQYPGPNPPQ YYQYGYYPPP PPAMPVPPFA
101: SFDHHHRGGG GVGPNGEYPT HHPGWVGGGR YPPYGPPPPP LTYVEHQKAV TIRNDINIKK ETLRVEPDEQ NAGRFLVAFT FDATVAGSIT VFFFAKEGTD
201: CDVTATKEDL LAPVTVSFKE GLGQRFRQPS GTGIDFSIFD EAELMKGGEL GMYPLAVKAE ASLSGNQGPV GENQKLEIPN SQITQAVFEK KENCEYNVRV
301: VKQILWVNQT RYELQEIYGI GNSVDNDTDG NDPGKECVIC LSEPRDTTVL PCRHMCMCSN CAKVLRFQTN RCPICRQPVE RLLEIKVNNT AEQQQEPQC

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.