Factsheet for PGSC0003DMT400045328

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400067619
PGSC0003DMT400069203
PGSC0003DMT400075273
PGSC0003DMT400075274

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53410.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G53410.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G03200.1	PGSC0003DMT400067619	AT5G24920.1	22291198
AT5G03200.1	PGSC0003DMT400075273	AT5G24920.1	22291198
AT5G03200.1	PGSC0003DMT400075274	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086080.1.1	Tomato	nucleus	88.0	91.94
PGSC0003DMT400004461	Potato	plastid	75.43	72.73
PGSC0003DMT400027153	Potato	nucleus, plastid	65.14	71.92
CDY41587	Canola	cytosol	52.0	66.18
CDX70325	Canola	cytosol	19.14	65.05
VIT_08s0040g01940.t01	Wine grape	cytosol	66.29	64.09
GSMUA_Achr5P14690_001	Banana	cytosol	53.71	61.24
Zm00001d015671_P001	Maize	cytosol	38.57	60.0
KRH19856	Soybean	nucleus	59.43	59.6
GSMUA_Achr11P...	Banana	cytosol	50.29	59.46
KRH32464	Soybean	plastid	58.86	59.03
GSMUA_Achr7P01960_001	Banana	cytosol	50.29	57.52
CDY41312	Canola	plastid	60.57	56.99
Bra034086.1-P	Field mustard	nucleus, plastid	60.29	56.87
AT3G53410.1	Thale cress	cytosol	48.57	56.86
CDY22203	Canola	mitochondrion, plastid	60.29	56.72
AT3G09770.1	Thale cress	plastid	61.14	55.15
Bra003133.1-P	Field mustard	nucleus	45.14	54.67
CDY67386	Canola	cytosol	45.14	54.67
KRH67682	Soybean	nucleus	52.86	54.25
KRG95976	Soybean	plastid	56.57	54.1
Bra029788.1-P	Field mustard	nucleus, plastid	58.86	54.07
CDY13299	Canola	cytosol	44.57	53.06
CDY44729	Canola	plastid	58.57	52.7
GSMUA_Achr2P12340_001	Banana	nucleus	60.0	52.63
CDY62899	Canola	cytosol	39.43	51.88
Bra028846.1-P	Field mustard	cytosol	39.43	51.88
TraesCS4A01G083500.1	Wheat	cytosol	60.0	51.85
TraesCS4B01G220700.1	Wheat	cytosol	60.0	51.85
TraesCS4D01G221000.1	Wheat	cytosol	60.0	51.85
Zm00001d028475_P002	Maize	cytosol	59.14	51.75
EER92535	Sorghum	nucleus	59.43	51.74
CDY44348	Canola	cytosol	38.86	51.71
AT5G03200.1	Thale cress	mitochondrion	49.14	51.04
KRH05126	Soybean	cytosol	14.0	50.52
CDY10400	Canola	cytosol	42.29	49.66
Bra009546.1-P	Field mustard	cytosol	42.0	49.49
Os10t0204100-01	Rice	nucleus	59.43	48.94
TraesCS7B01G390000.1	Wheat	mitochondrion	38.57	48.91
TraesCS7D01G473200.1	Wheat	cytosol	42.0	48.51
TraesCS7A01G486700.1	Wheat	cytosol	41.71	48.18
HORVU0Hr1G008700.4	Barley	cytosol	57.43	47.41
CDX70324	Canola	cytosol	21.71	45.24
Os01t0374900-01	Rice	plastid	40.29	45.05
Solyc04g054680.1.1	Tomato	cytosol	44.86	43.85
HORVU7Hr1G109550.2	Barley	cytosol	41.14	43.77
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	57.14	41.58
PGSC0003DMT400073576	Potato	plastid	39.43	35.84
Solyc04g054650.1.1	Tomato	cytosol	46.57	33.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400045328	EnsemblPlantsGene:PGSC0003DMG400017589	EntrezGene:102587358	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PGSC:PGSC0003DMG400017589	RefSeq:XP_015159045.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002954340
UniProt:M1BHH3	MapMan:35.1	:	:	:	:

Description

Zinc finger, RING-type [Source:PGSC_GENE;Acc:PGSC0003DMG400017589]

Coordinates

chr10:+:52123908..52128986

Molecular Weight (calculated)

39210.1 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.585

Length

350 amino acids

Sequence
(BLAST)

001: MGNTGSNGLN GRRRTYSHRR SHPPQPEITG NSYVFAAATP PYSYQQNPNT TPYYQYPGYY PPPYEQHSHH HMNPNYANWV NGGYPCGPPI IPPTPAPYVE
101: AVEHQKAVTI RNDVNLKKET LKIEADEANP GKYLVAFDFD ATIPGSLTVI FFAKEGEDCC LTPMKESLLP PITIKFQKGL SQKFRQSSGI GIDLSMFEEA
201: EWSKDGNADV YQLAVKAEAF EDAQSEPEDG NAVSVSTNSQ ITQAVFEKDK GEFKIRVVKQ ILWVNGMRYE LQEIYGIGNS VDKDFDGNDN GKECVVCLSE
301: PRDTTVLPCR HMCMCSGCAK VLRFQTNRCP ICRQPVERFL EIKVSEAAEE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.