Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G473200.1 | Wheat | cytosol | 93.48 | 85.15 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 91.3 | 83.17 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 91.67 | 76.9 |
| Os01t0374900-01 | Rice | plastid | 71.74 | 63.26 |
| CDX70325 | Canola | cytosol | 20.65 | 55.34 |
| GSMUA_Achr11P... | Banana | cytosol | 52.9 | 49.32 |
| CDY41587 | Canola | cytosol | 47.83 | 48.0 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 52.17 | 46.91 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 51.09 | 46.08 |
| Bra003133.1-P | Field mustard | nucleus | 45.65 | 43.6 |
| CDY67386 | Canola | cytosol | 45.65 | 43.6 |
| CDY13299 | Canola | cytosol | 45.29 | 42.52 |
| AT3G53410.1 | Thale cress | cytosol | 45.65 | 42.14 |
| TraesCS1B01G258900.1 | Wheat | cytosol | 34.78 | 42.11 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 48.19 | 41.96 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 47.1 | 40.75 |
| CDY44348 | Canola | cytosol | 38.77 | 40.68 |
| Solyc10g086080.1.1 | Tomato | nucleus | 47.83 | 39.4 |
| CDY10400 | Canola | cytosol | 42.39 | 39.26 |
| KRH19856 | Soybean | nucleus | 49.64 | 39.26 |
| KRH22903 | Soybean | mitochondrion, nucleus | 43.84 | 39.16 |
| Bra028846.1-P | Field mustard | cytosol | 37.32 | 38.72 |
| CDY62899 | Canola | cytosol | 37.32 | 38.72 |
| Solyc09g007700.2.1 | Tomato | plastid | 50.72 | 38.67 |
| PGSC0003DMT400045328 | Potato | plastid | 48.91 | 38.57 |
| PGSC0003DMT400004461 | Potato | plastid | 50.72 | 38.57 |
| KRH32464 | Soybean | plastid | 48.55 | 38.4 |
| Bra009546.1-P | Field mustard | cytosol | 41.3 | 38.38 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 50.0 | 38.12 |
| KRH05126 | Soybean | cytosol | 13.04 | 37.11 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 53.62 | 37.09 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 46.74 | 36.96 |
| KRH67682 | Soybean | nucleus | 45.29 | 36.66 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 48.91 | 36.39 |
| CDY22203 | Canola | mitochondrion, plastid | 48.91 | 36.29 |
| AT5G03200.1 | Thale cress | mitochondrion | 44.2 | 36.2 |
| KRG95976 | Soybean | plastid | 47.83 | 36.07 |
| CDY41312 | Canola | plastid | 48.19 | 35.75 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 51.81 | 35.31 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 48.55 | 35.17 |
| AT3G09770.1 | Thale cress | plastid | 48.19 | 34.28 |
| CDY44729 | Canola | plastid | 48.19 | 34.19 |
| CDX70324 | Canola | cytosol | 18.84 | 30.95 |
| Solyc04g054680.1.1 | Tomato | cytosol | 31.88 | 24.58 |
| Solyc04g054650.1.1 | Tomato | cytosol | 36.59 | 20.78 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G390000.1 | EnsemblPlantsGene:TraesCS7B01G390000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF6 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16789 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7B:+:656507514..656510345
Molecular Weight (calculated)
30692.3 Da
IEP (calculated)
6.050
GRAVY (calculated)
-0.462
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGRRRAAA APPPVPFPTH VERHRAVAVS AGVNVKGHTL RLERDDDGSG HLLAFSFDAD APGSITVYFF AQEGDDCVLK GTKENLLKPV TVTFKEGHGQ
101: EFRQPSGTGI KLSVFEESDL TKVGEDRVFP LAFKVEVGVP SNQELEREHD AEDSKALVKF AVFVKKDSAE YGVNIVQQIL WVNGTRYVLQ EIYGIGDRNT
201: ADRNVNEDDS GKECVVCLTE PRDTTVLPCR HMCLCRECAQ TLRFQTNKCP MCRQPVESLL EIKVDSTPRH HEGRDQ
101: EFRQPSGTGI KLSVFEESDL TKVGEDRVFP LAFKVEVGVP SNQELEREHD AEDSKALVKF AVFVKKDSAE YGVNIVQQIL WVNGTRYVLQ EIYGIGDRNT
201: ADRNVNEDDS GKECVVCLTE PRDTTVLPCR HMCLCRECAQ TLRFQTNKCP MCRQPVESLL EIKVDSTPRH HEGRDQ
001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
Arabidopsis Description
LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.