Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67386 | Canola | cytosol | 89.12 | 90.66 |
| AT3G53410.1 | Thale cress | cytosol | 68.71 | 67.56 |
| CDX70325 | Canola | cytosol | 22.11 | 63.11 |
| CDY41587 | Canola | cytosol | 53.06 | 56.73 |
| CDY13950 | Canola | cytosol | 17.69 | 52.53 |
| Zm00001d015671_P001 | Maize | cytosol | 40.14 | 52.44 |
| GSMUA_Achr11P... | Banana | cytosol | 52.04 | 51.69 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 51.7 | 49.51 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 50.34 | 48.37 |
| KRH19856 | Soybean | nucleus | 57.14 | 48.14 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 51.7 | 47.95 |
| KRH32464 | Soybean | plastid | 56.8 | 47.85 |
| CDY44348 | Canola | cytosol | 41.84 | 46.77 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 50.68 | 46.71 |
| CDY62899 | Canola | cytosol | 41.5 | 45.86 |
| Solyc10g086080.1.1 | Tomato | nucleus | 52.04 | 45.67 |
| PGSC0003DMT400004461 | Potato | plastid | 56.12 | 45.45 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 42.52 | 45.29 |
| CDY41312 | Canola | plastid | 57.14 | 45.16 |
| CDY22203 | Canola | mitochondrion, plastid | 57.14 | 45.16 |
| Solyc09g007700.2.1 | Tomato | plastid | 55.1 | 44.75 |
| CDY10400 | Canola | cytosol | 45.24 | 44.63 |
| PGSC0003DMT400045328 | Potato | plastid | 53.06 | 44.57 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 54.76 | 44.48 |
| CDY13958 | Canola | cytosol | 28.57 | 43.75 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 44.56 | 43.23 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 44.56 | 43.23 |
| CDY44729 | Canola | plastid | 56.8 | 42.93 |
| KRH67682 | Soybean | nucleus | 48.98 | 42.23 |
| KRH05126 | Soybean | cytosol | 13.61 | 41.24 |
| Os01t0374900-01 | Rice | plastid | 43.88 | 41.21 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 55.78 | 41.1 |
| KRG95976 | Soybean | plastid | 50.34 | 40.44 |
| EER92535 | Sorghum | nucleus | 55.1 | 40.3 |
| Zm00001d028475_P002 | Maize | cytosol | 54.76 | 40.25 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 54.76 | 39.75 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 54.76 | 39.75 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 54.42 | 39.51 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 43.88 | 39.21 |
| CDX70324 | Canola | cytosol | 22.11 | 38.69 |
| Os10t0204100-01 | Rice | nucleus | 54.42 | 37.65 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 53.74 | 37.26 |
| CDX92559 | Canola | mitochondrion | 43.2 | 34.14 |
| CDY05235 | Canola | mitochondrion | 41.84 | 33.7 |
| CDY24715 | Canola | mitochondrion | 41.16 | 33.33 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 53.06 | 32.43 |
| CDY13949 | Canola | mitochondrion | 42.52 | 32.38 |
| Solyc04g054680.1.1 | Tomato | cytosol | 35.37 | 29.05 |
| Solyc04g054650.1.1 | Tomato | cytosol | 38.1 | 23.05 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078FK12 | UniProt:A0A078FK12 | EnsemblPlants:CDY13299 | ProteinID:CDY13299 |
| ProteinID:CDY13299.1 | EnsemblPlantsGene:GSBRNA2T00071284001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PFscan:PS50089 |
| PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEC929 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC06g14580DBnaC06g14580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK12]
Coordinates
chrLK032034:+:77709..79102
Molecular Weight (calculated)
32393.1 Da
IEP (calculated)
5.191
GRAVY (calculated)
-0.460
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNVTGGMRR DPPPHTNPNH PPLQYYQYQG YYPHHNPQGA INPQVAYVEH QEAVTIKNDV NLNKDTLRFE PDESNPGKFL LSFTFDANVS GSITVMFFAI
101: EGKDCDLIAT KADLFPSTTV SFPKGLGQKF KQPFGTGIEL SALSEAELAE ANESDVYHVA VKAEASSASS EDDTEAKTPN RQITHAVLDK DKGEYKAKVV
201: KQVLWVNGSK YVLQEIYGIG NTVDGSGEDE TESGKECVIC LTEPRDTTVL PCRHMCMCSG CAKLLRFQTN LCPICRQPVN RLLEITVNTN VSNN
101: EGKDCDLIAT KADLFPSTTV SFPKGLGQKF KQPFGTGIEL SALSEAELAE ANESDVYHVA VKAEASSASS EDDTEAKTPN RQITHAVLDK DKGEYKAKVV
201: KQVLWVNGSK YVLQEIYGIG NTVDGSGEDE TESGKECVIC LTEPRDTTVL PCRHMCMCSG CAKLLRFQTN LCPICRQPVN RLLEITVNTN VSNN
001: MGNVISGGSR PENHRDRTSP PYPNPNAQYQ GNYPSPYQDC ARYPYGEMAS PVQYVEHQEA VTIRNDINLK KETLRLEPDE QNPGKFLLSF TFDASVPGSI
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN
Arabidopsis Description
LUL2Probable E3 ubiquitin-protein ligase LUL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.